Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq736048 96.9 6e-15 seq113432 95.1 2e-14 seq109077 93.3 8e-14 seq611781 89.7 9e-13 seq702768 86.0 1e-11 >seq736048 Length=1016 Score = 96.9 bits (106), Expect = 6e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| |||||||| || | |||||||||||||| || || ||||| || || || ||| Sbjct 34 TGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATT 93 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || ||||| || || ||||| || ||||| ||||| || ||||||||| Sbjct 94 TTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCAAGAGTGATTGTTTTACCA 153 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || | || |||||||| Sbjct 154 GTTAAGGTCTTCACAAAAATCTGCAT 179 Score = 89.7 bits (98), Expect = 9e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| || || | |||| ||| | || || | || ||||||||||| |||| ||| Sbjct 226 ATATTGTAGTCAGCCAAAGTTCGACCATCTTCTAGCTGCTTACCAGCAAAGATTAGCCTC 285 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || ||||| || || || ||||| ||| ||||| || || Sbjct 286 TGCTGGTCGGGTGGAATACCTTCCTTGTCCTGGATTTTTGCTTTCACATTGTCGATGGTG 345 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 ||||| || || || || || || ||||||||||| | || || | ||||| ||| Sbjct 346 TCTGAACTCTCAACCTCAAGGGTGATAGTTTTACCAGTAAGGGTCTTCACAAATATTTGC 405 Query 172068 AT 172069 || Sbjct 406 AT 407 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| |||||||||||||| || | ||||| ||||| || || || || || || Sbjct 481 TCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTG 540 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || |||||| ||| |||||| || || ||||| || ||||| || ||||| Sbjct 541 TCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCAACTTCAAGGGTAATA 600 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| | || || | || || ||||| Sbjct 601 GTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 635 >seq113432 Length=226 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| || || || |||||||| || |||||||| || ||||| ||| Sbjct 213 TGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCTTCCTTGTCTTGGATT 154 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || |||||||| | |||||||| || ||||| || || ||||| || || Sbjct 153 TTCGCCTTTACATTGTCAACTGTATCTGAGCTCTCAACTTCAAGGGTGATGGTCTTTCCG 94 Query 172044 GTTAATGTTTTAATGAATATCTGCATT 172070 || | ||| |||| ||||| |||||| Sbjct 93 GTGAGTGTCTTAACAAATATTTGCATT 67 >seq109077 Length=726 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || || || | || | |||||| ||| || ||||| Sbjct 419 ATGCCACCACGGAGGCGGAGGACCAAGTGAAGTGTTGACTCTTTCTGAATGTTGTAATCC 478 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| |||| |||| || || || || ||||| | ||||| ||||| ||| Sbjct 479 GCGAGAGTTCGGCCGTCTTCCAGCTGCTTCCCTGCGAAAATCAGCCTCTGCTGGTCCGGT 538 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || ||||| || || ||| ||| || || || || || || ||| Sbjct 539 GGAATGCCCTCCTTATCCTGGATCTTAGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCG 598 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||||||||| || || || || | ||||||| || ||||||||| Sbjct 599 ACCTCTAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACAAAAATCTGCATT 649 >seq611781 Length=262 Score = 89.7 bits (98), Expect = 9e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| || || || ||||| || || |||||||| || ||||| ||| Sbjct 240 TGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATT 181 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || |||||||| || ||||| || ||| || || || || ||||| || ||| Sbjct 180 TTCGCCTTTACATTGTCGATTGTATCAGAGCTTTCCACCTCAAGCGTGATGGTCTTTCCA 121 Query 172044 GTTAATGTTTTAATGAATATCTGCATT 172070 || | ||| || | ||||| |||||| Sbjct 120 GTCAGTGTCTTTACAAATATTTGCATT 94 >seq702768 Length=508 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | ||| || | || || || | ||||| ||| || ||| || ||||| | Sbjct 327 CCCCCACGAAGACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCA 268 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | || ||||| || || || ||||| || | ||||| || || || || Sbjct 267 AGAGTCCGACCATCCTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGG 208 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| || || || ||||| || |||||| |||||| ||||| || || Sbjct 207 ATCCCTTCCTTGTCCTGAATTTTTGCCTTCACATTATCTATAGTGTCTGAGCTCTCAACC 148 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| || || || || | || || | ||||||||||| Sbjct 147 TCTAGTGTAATTGTCTTTCCCGTCAGGGTCTTCACAAATATCTGCAT 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896581050525000