Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq728136 131 5e-25 seq686278 114 4e-20 seq662984 111 5e-19 seq5092 107 6e-18 seq682924 104 7e-17 seq714447 98.7 3e-15 >seq728136 Length=2057 Score = 131 bits (144), Expect = 5e-25 Identities = 283/417 (68%), Gaps = 10/417 (2%) Strand=Plus/Minus Query 288940 AATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCT 288999 ||||||||||| ||| || | ||||| | ||||| || || |||||||| |||| Sbjct 1814 AATCCATCCATCTCTGTCAACAGCTGATTGATGGTTTGCTCTCTCTCATCATTCCCACCT 1755 Query 289000 CTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATC 289059 | | ||| | | ||| | | || || ||||||||||| |||||||| | Sbjct 1754 CC---AAGACCTGCCCCTCTC---TGCCTCCCCACTGCATCAATTTCATCAATGAACACA 1701 Query 289060 ACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 | || || | ||| | | || | |||| || || | || | ||||||||| | Sbjct 1700 ATGCAGGGTGCCTTTGATTTTGCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACT 1641 Query 289120 CCAACATACATTTCTACAAATTCAGAAGC-GGATACTTGAATGAATGTTACATTTGCTTC 289178 || ||| ||| ||| || |||||||| || | || ||| ||||| ||| |||||| Sbjct 1640 CCTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAA-GAATGGCACACCTGCTTC 1582 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 || || ||||| || ||||| || ||||| || ||||| |||||||| | || ||| Sbjct 1581 TCCGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGGTGGTCCAACCAAAAGACA 1522 Query 289239 TCCCTTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTA 289297 ||||| || | ||| || ||||| | | || || |||||| | || || || || | Sbjct 1521 ACCCTTGGGAATTTTGGCTCCCAG-GGCGGTGTACTTATCAGGGTTTTTCAAGAAATCGA 1463 Query 289298 CAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 ||| |||| || || |||||||| ||| ||| || ||||| || || |||| Sbjct 1462 CAACCTCCTGCAGCTCCAGTTTTGCCTGATCGGCTCCGGCGACATCTGCGAATGTAA 1406 >seq686278 Length=2433 Score = 114 bits (126), Expect = 4e-20 Identities = 327/490 (67%), Gaps = 26/490 (5%) Strand=Plus/Plus Query 288873 TAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAG-ATTCGG 288931 ||| || | ||| | || || || ||||| || ||||| | |||| ||| | | | Sbjct 546 TAAGGCAGAGTCAAGAATGTCTGCCCTGTTAGTGGCTGCAATAACAATTATACCAGT--G 603 Query 288932 TTTGCTT-AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCA 288990 ||| ||| ||| |||||||| || |||| || ||||| |||||||||||||||||| Sbjct 604 TTTCCTTCAAAACCATCCATTTCAGTCAAAAGCTGGTTAAGAGTTTGTTCCCTTTCATCA 663 Query 288991 TTTGAACCTCTTGAATCACCCGAATC--GCTCCtttttttA--CCAACAGCATCAATTTC 289046 ||| |||| | || | || | |||| ||| ||||||||||||||||| Sbjct 664 TTT---CCTCCT-------CCAATTCCAGTTCCTCTTTGGCGCCCAACAGCATCAATTTC 713 Query 289047 GTCAATGAAAATCACACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACA 289104 |||| || | | || |||| ||| | | || ||| ||| | || | || Sbjct 714 ATCAACAAATACAATGCAGGGAGCATTCTCCTTGGCCTTCTTGAAAAGA--TCACGGACT 771 Query 289105 CGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAA 289163 | ||||| |||| ||||||| |||| || ||||| |||||| | || | | || | || Sbjct 772 CTAGATGCACCAACACCAACAAACATCTCAACAAACTCAGAACCTGAGA-TAGAGAAAAA 830 Query 289164 TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGG 289223 || ||| |||||| || || | |||| | || || || ||||| || ||||| || || Sbjct 831 TGGAACACCTGCTTCACCAGCAATTGCCTTAGCTAGCAGAGTCTTCCCAGTTCCTGGAGG 890 Query 289224 TCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCT 289283 || | | ||||| || || || | || ||| | | | || |||| ||||| Sbjct 891 GCCAACAAGAAGAACACCTTTAGGAATGCGAGCTCCAACTGCAGTGAATCTCTC-GGGCT 949 Query 289284 CTTT-AAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACAT 289342 ||| | ||| || || | |||| | || | |||||| ||||| || || |||| Sbjct 950 TTTTCAGAAACTCCACTACTTCCATGAAATCTTGTTTTGCTTCATCTACCCCAGCAACAT 1009 Query 289343 CAGCAAAAGT 289352 || |||| || Sbjct 1010 CATCAAATGT 1019 >seq662984 Length=5796 Score = 111 bits (122), Expect = 5e-19 Identities = 263/385 (68%), Gaps = 13/385 (3%) Strand=Plus/Plus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 |||||||| || ||| | |||||||| |||||| ||| | || || ||| || Sbjct 2273 TGATTAAGAGTACTTTCACGCTCATCATTGGAACCTGA-GAAGCCTCCACGTC-CTC-TT 2329 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | ||||| |||||||| || ||||| || || | || || | | || || || Sbjct 2330 GCTCGACCAATTGCATCAATCTCATCAATAAATATTATACTAGGTGCACACTGCCTTGC- 2388 Query 289084 ATTGC--AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATT 289141 || | ||| || | ||| || | ||||| ||||| ||||||| |||| || | ||| | Sbjct 2389 -TTCCTGAAACAAGTTTCTCACCCTGGATGGTCCAACACCAACAAACATCTCCATAAAAT 2447 Query 289142 CAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGA 289200 | ||| | |||| | || | ||| | || | ||| ||||| ||| | || ||| Sbjct 2448 CTGAACCAGATA-TGGATAAGAAAGGCACGGCAGATTCTCCTGCAGTTGCTTTTGCTAGA 2506 Query 289201 AGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCC 289259 || ||||| ||||| || || || ||| | || ||| | || ||||| | |||||| ||| Sbjct 2507 AGGGTCTTCCCTGTGCCTGGAGGGCCCACCAAAAGAGCACCTTTTGGAATTTTTGCTCCC 2566 Query 289260 AGCAGACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATT 289318 | | ||| |||||| | ||| |||| | || | |||| |||| | ||| | | Sbjct 2567 AACT--CTTCATATTTTTTAGGATTCTTGAGGAAGTGCACAAATTCCATGATTTCTTGCT 2624 Query 289319 TTGCCTCATCACATCCTGCTACATC 289343 |||| ||||||||||| || ||||| Sbjct 2625 TTGCTTCATCACATCCAGCAACATC 2649 >seq5092 Length=1596 Score = 107 bits (118), Expect = 6e-18 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||| || ||||| ||||| || ||||| | |||||| || | || Sbjct 1280 TACCCTTCCTCTTGCCTCCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTA 1221 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||||||||| ||| |||||||| || ||||| ||||| ||||||| || | | | Sbjct 1220 GCATAGGAACAATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCAC 1161 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| ||||||| | | ||||| || || | | || || ||| || |||| Sbjct 1160 GAATGTTATGAACAGAAACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCT 1101 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||| ||| | | || ||||||||| |||||||| ||| Sbjct 1100 TTAGAGTGTCATATATTCCTTCAATACTATCATCTTTCAT 1061 >seq682924 Length=7759 Score = 104 bits (114), Expect = 7e-17 Identities = 228/340 (67%), Gaps = 4/340 (1%) Strand=Plus/Minus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 || || || ||| |||||| | ||| || || |||||| ||| | | || | | Sbjct 901 TTCCTAACAGTCCCATCATATTTGACCATGATATCCTCCATAGCCTTCACCAGTCGTCTC 842 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 || ||||| |||||| || || || || || ||||| || || || | | ||||||| Sbjct 841 TGGATATACCCAGTTTCGGAAGTCTTCACCGCAGTATCTATAAGGCCTTCTCTACCACCC 782 Query 302659 ATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAA 302718 || |||||||| || | ||| | || || || | | | | || | || || || Sbjct 781 ATGGCATGGAAAAAGAACTCCTGTGGGGTCAGTCCTCGCAGATAAGAATTTTCCACAAAC 722 Query 302719 CCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT-- 302776 ||||| || || || ||| ||||| || ||||||| |||| | | || Sbjct 721 CCACGACTTTCTGGGCCATAGTCATCTTTGGTGAAATGTGGCAATGTCCGG--CCAATGA 664 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || |||||||| ||||| || |||||||||||||| |||| || | | ||||||| | Sbjct 663 ATCCATATGGGATTCGCTTACCCTCAACGTTCTGCTGCCCCACACAAGCAGTCATCTGTG 604 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 | ||||| | ||| || |||||| | || | ||||| Sbjct 603 ATATATTGATGAAACTTCCTTTGGAGTCTGCTGTAACCAT 564 >seq714447 Length=2775 Score = 98.7 bits (108), Expect = 3e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| ||||| || || ||||||||| | |||| | | || | ||| |||| | | Sbjct 1166 ACAGACATGAACCCTATAAGCATCACTTTGGTCAAACAACCTTTCTTTGAGGAAGTGGGC 1225 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||| || || | |||||| || ||||| |||||||| || ||||| ||||||||||| || Sbjct 1226 TGCTCCATGAGCAATCATGCAGTCACGTTCCATTTCTCCAAAACGGAGACCACCATCACG 1285 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 || | ||||| |||||||| | ||| || | | ||||| | || || Sbjct 1286 AGATCGCCCCTCAGCAGGCTGTCTAGTAAGGATTTGTACTGGACCCCTCCCACGTGAGTG 1345 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 |||||||| ||||| ||||| || | ||||||| | | ||||| | ||| || Sbjct 1346 GATCTTATCATCCACCATGTGCTTAAGCCTCTGGTAGTAAGTAGGACCCAGGAATAT 1402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1457558849564125