Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq516297 244 1e-59 seq551508 233 2e-56 seq545415 163 3e-35 seq616439 143 3e-29 seq541212 87.8 2e-12 seq141858 87.8 2e-12 seq493281 86.0 7e-12 seq161073 86.0 7e-12 >seq516297 Length=515 Score = 244 bits (270), Expect = 1e-59 Identities = 370/521 (71%), Gaps = 13/521 (2%) Strand=Plus/Minus Query 72691 TCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCA 72750 |||||||||||||| ||||| ||||| ||||| |||||||||||| | || ||| | || Sbjct 515 TCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCTAGGCT 456 Query 72751 GAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGT 72810 || |||||||| || |||||| | ||||| ||| || ||| ||| | || |||||| Sbjct 455 GAGCACAACATCCTTATGCACTCATTCCACATGTT-GGCATAGTTGGTGTATTTGGTGGT 397 Query 72811 AGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACA 72870 || ||||||| ||||| |||||| | || || || | | || || || || | | Sbjct 396 TCCCTATTCAGTGTTATGCATGGTTCATTGGTAACCTCTAGTTTGATTAGGGAAACCATA 337 Query 72871 GAGAACGAGAGT-CAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACAT 72929 || || || | | || || || || | |||| ||||| |||||||| ||||| || Sbjct 336 GAAAATGAATCTGCGAATGTA-GGTTACACATTCGATCAAGATGAAGAAACTTATAATAT 278 Query 72930 TGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTC 72989 | ||||||||||| || | ||| |||| || ||||| ||||| |||||| || || Sbjct 277 TACGGCTGCTCATGGTTATTCTGGTCGATTGATTTTCCAATATGCTATATTCAATAATTC 218 Query 72990 TCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAAT 73049 |||||| ||||| |||||||| | || | ||| |||| || | ||||| | | | Sbjct 217 TCGTTCTTTACATTTCTTCCTAGTTGCTTGGCCTATAGTAGGTATCTGGTTCATTGCTTT 158 Query 73050 GGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGA 73109 |||||| || || | ||| |||| || || ||||| ||||||||||| | ||| Sbjct 157 AGGTATCAACACTCTGACTTTCTACCTAAATGGTTTCAATTTCAACCAATC---TATAGT 101 Query 73110 TGCAAACGGAAAGATTGTACCA-----ACATGGGGAGATGTTCTTAACAGAGCAAACCTT 73164 || | | ||| |||| | || | || ||| || | || | || |||||| Sbjct 100 TG--ATAGTCAAGGTTGTGTAATTAATACTTAGGCTGATATTATAAATCGTGCTAACCTT 43 Query 73165 GGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCC 73205 || |||||||||||||||||| | ||||| || || ||||| Sbjct 42 GGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCC 2 >seq551508 Length=510 Score = 233 bits (258), Expect = 2e-56 Identities = 341/482 (71%), Gaps = 0/482 (0%) Strand=Plus/Plus Query 72562 TACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTA 72621 ||||||||| | |||||||||| | | | || | ||| | |||||||| ||| Sbjct 18 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGCTATGCGCCCTTGGATTGTTGTT 77 Query 72622 GCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAG 72681 ||||| ||||| ||||| | || || ||| | ||| | | || ||| | ||||| Sbjct 78 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAA 137 Query 72682 GGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTG 72741 || || | |||||||||||| |||| ||||| ||||| |||||||||||| | || Sbjct 138 GGAAGCTTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTCATGATTGTA 197 Query 72742 TTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATG 72801 ||||| | || |||||||| || |||||||| ||||| ||| || |||||| ||| | Sbjct 198 TTCCAGGTTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGATGTAGCTGGTGTA 257 Query 72802 TTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGA 72861 ||||| ||| || ||||| || ||||| ||||| | || || || | | || || Sbjct 258 TTCGGCGGTTCCCTATTCAGAGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATAAGG 317 Query 72862 GAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACA 72921 || || ||| | || || | || || || || ||||| ||||| |||||||| Sbjct 318 GAAACCACAAAAAATGAATCTGCTAATGCAGGTTACAAATTCGGTCAAGAGGAAGAAACT 377 Query 72922 TATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTC 72981 ||||| ||||| ||||||| || || || || |||| || ||||| ||||| ||| Sbjct 378 TATAATATTGTGGCTGCTCCAGGTTATTTTGGCCGATTGATATTCCAATATGCTAGTTTC 437 Query 72982 AACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTA 73041 || || || |||| ||| | |||||||| |||| | |||||||| || | ||||| Sbjct 438 AATAATTCATGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC 497 Query 73042 AC 73043 || Sbjct 498 AC 499 >seq545415 Length=298 Score = 163 bits (180), Expect = 3e-35 Identities = 216/297 (73%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 72901 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 72960 ||||| ||||| |||||||| ||||| ||||| ||||||||||| || || || |||| Sbjct 1 TTCGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCTGATTG 60 Query 72961 ATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTC 73020 |||||| | ||||| ||| | || |||||||| ||||| |||||| | |||| | Sbjct 61 ATCTTCTAATATGCTAGTTTCTATAATTCTCGTTCTTTACATTTCTTCATAGCTGCTTGG 120 Query 73021 CCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAAC 73080 | |||||| || | ||||| | | | |||||| | || ||| | |||||||| || Sbjct 121 CTTGTAGTAGGTATCTGGTTCATTGCTTTAGGTATCGGCACTATGACTTTCAACCTAAAT 180 Query 73081 GGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGG 73139 || ||||| || |||||||| | || ||| || || || | | || |||| Sbjct 181 GGTTTCAATTTTAACCAATCTATAGTTGATAGCCAA-GGTCGTGTAATTAATACTTGGGC 239 Query 73140 AGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACA 73196 ||| || | ||| | || |||||||| |||||||||||||||||| | ||||| || Sbjct 240 TGATTTTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCA 296 >seq616439 Length=1776 Score = 143 bits (158), Expect = 3e-29 Identities = 242/345 (70%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 |||| ||||| |||||| |||| ||||| |||| |||||||||||| | || ||| | Sbjct 185 TTCTATGATGATATGCCTTTAGGAATCTCTAGTACTTTCAACTTCATGATTGTATTCTAG 244 Query 72748 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 72807 | || |||||||| || ||||||| ||||| || |||||||| ||| | || | | Sbjct 245 GTTGAGCACAACATCCTTATGCACCTATTCCACTTGTTAGGTGTAGTTGGTGTATTTGAT 304 Query 72808 GGTAGTC--TCTTCAGTGCAATGCACGGTTCACTTGTTA--CTTCATCTCTAATCAGAGA 72863 | |||| | |||| || ||||| |||| |||| || ||| | | | |||| || Sbjct 305 G--AGTCTTTATTCAATGTTATGCATGGTT-TCTTGGTAACCTTTA-GTTTGATCAAGGA 360 Query 72864 GACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATA 72923 || ||| | || || | || || || || || |||| ||||| |||||||| || Sbjct 361 AACCACAAAAAATGAATTTGTTAATTAAGGTTACAAATTCGATCAAGATGAAGAAACTTA 420 Query 72924 TAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAA 72983 ||| || || | ||||||||| || || || |||| || || || |||| || | Sbjct 421 TAATATCGTAGTTGCTCATGGTTATTTTAGTCGATTGATTTTTCAATATGGTAGTTTGGA 480 Query 72984 CAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGT 73028 | |||||||| ||||| |||||| | | ||| | | |||||| Sbjct 481 TATTTCTCGTTCTTTACATTTCTTCATAGTTGTTTGGCATGTAGT 525 >seq541212 Length=444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 73587 TATTGTTCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTG 73646 ||||||| || ||||| || || |||||||||||| || || ||| ||||||||||| Sbjct 437 TATTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGCATCAATTAGGTG 378 Query 73647 GACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATG 73699 | || |||| ||||| || | ||| | | || ||||| |||||||||||| Sbjct 377 GTCTGTGGACTTTTGTTGCTCTTCATTGTGCTTTCGGACTAATAGGTTTCATG 325 >seq141858 Length=237 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 73430 CTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACC 73489 || || |||||||| || | || | || ||||||||| | | || || || || || Sbjct 236 CTCTTTCCTTGTGCCTATTTCGCTTTGGGGGGTTGGTTCACAAGTACAACCTTTGTAACT 177 Query 73490 TCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCA 73549 |||||||| || ||||| | || || ||| | || || ||||| ||||| | Sbjct 176 TCATGGTATACCCATGGATTGGCTAGTTCTTATTTGGAAGGTTGCAATTTCTTAACCACC 117 Query 73550 GCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAG 73609 ||||| | || ||| | || | | | ||| | ||||||| | ||||| | || Sbjct 116 GCAGTTTATACCCCTACTAATAGTTTAGCACATTCTTTATTGTTATTATGGGGTCTTGAA 57 Query 73610 GCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGC 73665 | |||||||||| || || |||| |||||||||||| || |||| ||||| || Sbjct 56 GGACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGC 1 >seq493281 Length=200 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 72379 GAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCA 72438 ||||| ||| | || ||| | | ||||| ||||| || ||||||||||| | |||| Sbjct 199 GAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATCATTCCT 140 Query 72439 TCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAG 72498 |||| || ||||| || ||||| || || || | ||||||| | | | || || Sbjct 139 ACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATAGGAAGCAACATCCGTTGATGAA 80 Query 72499 TGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCT 72558 ||||| || || || |||||||| || || || || | |||||| | |||| | || Sbjct 79 TGGTTATACAATGGTGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 20 Query 72559 GCCTACATGGGT 72570 ||||||||| Sbjct 19 TGTTACATGGGT 8 >seq161073 Length=246 Score = 86.0 bits (94), Expect = 7e-12 Identities = 167/244 (68%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 72493 GACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGA 72552 || || ||||| || || || || ||||| || || || || | |||| | | |||| Sbjct 6 GATGAATGGTTATACAATGGTGGCCCTTATGAGCTAATTGTTCTACACTACTTACTTGGT 65 Query 72553 ATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGG 72612 | || ||||||||| | ||| |||||| | | ||||| ||| | |||| Sbjct 66 GTAGCTTTTTACATGGGTCGTGAGTAGGAACTTAGTTTCCATCTAGGTATGCACCATTGG 125 Query 72613 ATATGTGTAGCATACTCAGCACCTGTATCTGCAGC-ATT--TGCAGTATTCCTTGTGTAT 72669 || ||| ||||| | ||| ||| | |||||| | | ||| || ||| | | || Sbjct 126 ATTGTTGTTGCATATTTAGCTCCTAT---TGCAGCTACTACTGCTGTTTTCTTGATCTAC 182 Query 72670 CCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAAC 72729 ||| | ||| | || || |||||||||||||| ||||| ||||| ||||| |||||| Sbjct 183 CCAATTGGTTAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAAC 242 Query 72730 TTCA 72733 |||| Sbjct 243 TTCA 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567459049365000