Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq681135 156 5e-32 seq691023 98.7 1e-14 >seq681135 Length=1827 Score = 156 bits (172), Expect = 5e-32 Identities = 188/253 (74%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| || ||||| ||||| || || || ||||| | |||| | || ||| Sbjct 869 GAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGGAGACCTGG 928 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| ||||| || || ||| ||||| ||||| |||||||| Sbjct 929 ACCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATTCCGTCAGAAGCGGCGAAG 988 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||| || |||| ||||| ||||||| | |||| |||| | |||| Sbjct 989 AAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTGAGGTTTTCCCA-TTGACG 1047 Query 869813 GT-GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | ||| |||||| || |||||||||||||| | ||| ||||||||||| ||||| Sbjct 1048 CTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCCTCGGCCTTCTTGTA 1107 Query 869872 CATCTCCCATACT 869884 ||| ||||| ||| Sbjct 1108 CATTTCCCAGACT 1120 Score = 96.9 bits (106), Expect = 4e-14 Identities = 134/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 869219 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAG 869278 || |||||||| ||||| ||||| ||||| || || | |||||| || || ||||| ||| Sbjct 629 CCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAG 688 Query 869279 ATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG 869338 ||||| || ||| ||| || ||| || || ||||||||||| ||| ||| | Sbjct 689 ATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCC------G 742 Query 869339 TTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG 869398 | |||||| | ||||| | ||| || ||| ||| | || | || ||||| ||| Sbjct 743 TCGATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTGCG 802 Query 869399 CGAAAGAG 869406 ||||||| Sbjct 803 TGAAAGAG 810 Score = 87.8 bits (96), Expect = 2e-11 Identities = 169/248 (68%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| || || | | |||||| ||||||||||| |||| | ||||| Sbjct 275 GCCTTCTGGTACTCCCCAACCCTCTTCTCGAAGAAGTTGGTCTTTCCCTGCAAAGAGATT 334 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||||| |||||| || | ||||| ||| || | || | | || Sbjct 335 AGCTCCATCCAGTCGAACGGATTCGAAACGTTGTACATCTTCCCGTAACCCAAGGCGCCG 394 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||||||| ||||| || || |||||||| || | ||| || | |||||| || | Sbjct 395 AGCAGGCGATCGGCAACGAATTCGATGTATTGACTCATTAGAGCACTGTTCATCCCCACT 454 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||| | || |||| || |||||| | || || || || | ||| ||| | Sbjct 455 AGAGCGCACGGTAACGCGTCGCAGACGAACTCTCTTTCTATATCCACCGAGTCGGCGACG 514 Query 868931 ATCTGCCT 868938 || ||||| Sbjct 515 AT-TGCCT 521 >seq691023 Length=499 Score = 98.7 bits (108), Expect = 1e-14 Identities = 172/247 (70%), Gaps = 10/247 (4%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| || ||||| ||||| || | || ||||| | ||| | || ||| Sbjct 258 GAGTGGATGTTTTCAATGGCAATCTGAAATCTATAGAAGGCACGAGTCTCGGAGACCTGG 317 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| ||||| ||||| | ||| | ||||| ||||||| Sbjct 318 ACCTCCTTCATGAACCTTCCGGCGAGGTTTGCAAGGACGGTTCCGTCAGAAACGGCGAAG 377 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || ||||| || || | ||||| ||||||| | |||| |||| | ||| Sbjct 378 AAGGCAAGGACATGACTGGTGAAGTGTTTCTCGTCGCTGGTGAGGTTTTCCCA-TTAACG 436 Query 869813 GT-GTCGGCGCTGAG----GTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | ||| ||||| ||| || |||||||| ||||| | || | ||||| ||| | Sbjct 437 CTAGTC----CTGAGAGAAGTCGACTTCCTCGGCTGTCCAAAATGACGGCTCGGTCTTCT 492 Query 869868 TGTACAT 869874 ||||||| Sbjct 493 TGTACAT 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6045088041566625