Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq681135 127 3e-23 seq704910 87.8 3e-11 >seq681135 Length=1827 Score = 127 bits (140), Expect = 3e-23 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || ||||||||||||||||| | ||||| || || || ||||| ||| Sbjct 914 GCCTCGGAGACCTGGACCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATTCCG 973 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || |||||||| ||||| |||| || |||| ||||| ||||||| | |||| Sbjct 974 TCAGAAGCGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTGAGG 1033 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||| || | ||| ||||||||| ||||||||||||||||| || ||| Sbjct 1034 TTTTCCCATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCC 1093 Query 796330 TCGGCCTTTTTGTACATCTCCCA 796352 |||||||| |||||||| ||||| Sbjct 1094 TCGGCCTTCTTGTACATTTCCCA 1116 Score = 123 bits (136), Expect = 4e-22 Identities = 198/285 (69%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 794380 CCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAG 794439 || |||||||| ||||| ||||| ||||| || || | ||||| || || ||||| ||| Sbjct 629 CCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAG 688 Query 794440 ATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG 794499 ||||| || ||| ||| || ||| || || |||||||| || || ||| || Sbjct 689 ATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGTC---- 744 Query 794500 TTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG 794559 |||||| | ||||||| || || ||| ||| |||| | || ||||| ||| Sbjct 745 --GATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTGCG 802 Query 794560 CGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAG 794619 ||||||| || ||||| || ||||||| || | || | | || ||| Sbjct 803 TGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGTAC 862 Query 794620 GTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 |||| |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 863 ATCTCAGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAG 907 Score = 89.7 bits (98), Expect = 8e-12 Identities = 171/244 (70%), Gaps = 11/244 (5%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||| || || | | |||||| ||||||||||| |||| | ||||| | ||||||| Sbjct 284 TACTCCCCAACCCTCTTCTCGAAGAAGTTGGTCTTTCCCTGCAAAGAGATTAGCTCCATC 343 Query 793968 CACGGGAACGGGTTGG--CCGTCAGGTAGTGCTTCTCGCACCCGA--GCGACGCAAGCAG 794023 || |||||| || | ||| ||| |||| || | || | ||| || ||||| Sbjct 344 CAGTCGAACGGATTCGAAACGT--TGTACATCTTCCCGTAACCCAAGGCGCCG--AGCAG 399 Query 794024 GCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC 794083 ||| ||||| |||||||| ||||| || | ||| || || |||||| || | || || Sbjct 400 GCGATCGGCAACGAATTCGATGTATTGACTCATTAGAGCACTGTTCATCCCCACTAGAGC 459 Query 794084 -CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||| || | || |||| ||| |||||| | || || || || | ||| || ||| | Sbjct 460 GCAC-GGTAACGCGTCGCAGACGAACTCTCTTTCTATATCCACCGAGTCGGCGACGAT-T 517 Query 794143 GCCT 794146 |||| Sbjct 518 GCCT 521 >seq704910 Length=1084 Score = 87.8 bits (96), Expect = 3e-11 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || ||||||||||| ||||| || || |||||| |||||| |||||| | | Sbjct 203 TGAACTTCGTTACGGCCTTGGTTCCCTCCGAAACAGCGTGCTTGGCCAACTCGCCGGGAA 144 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || |||||||||||||| || | |||||| |||||| || Sbjct 143 GTACCAATCGTACTGCGGTCTGGATCTCCCGAGAAGTGATCGTCGGCTTCTTGTTGTAGC 84 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| || ||||| | | | |||| |||||||||| || ||||| Sbjct 83 GCGCCAGCCGCGATGCCTCCTGGGCAAGTTTCTCGAAGATGTCGTTGATGAAGCTGTTCA 24 Query 1485650 TGATCGACATCGATTTGTTGGAG 1485672 ||||| ||| | ||| ||||| Sbjct 23 TGATCCCCATGGCCTTGCTGGAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7835813935063875