Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq736048 158 9e-34 seq662336 125 5e-24 seq109077 120 2e-22 seq754749 114 1e-20 seq702768 114 1e-20 seq689433 109 4e-19 seq620935 96.9 3e-15 seq113432 86.0 5e-12 seq313781 82.4 6e-11 >seq736048 Length=1016 Score = 158 bits (174), Expect = 9e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || ||||| || ||||| ||||| ||||| ||||| || ||||||||||| || Sbjct 637 CCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCC 696 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| ||||| || || |||||| |||| | || ||||| || || ||| Sbjct 697 AATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGGA 756 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | |||| ||||||| | || | ||||| || || ||| Sbjct 757 ATACCCTCCTTGTCCTGGATTTTTGCTTTGACATTATCAATGGTGTCTGAGCTCTCAACT 816 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || |||||||| ||||| | ||| || ||||| || ||||| Sbjct 817 TCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 863 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||||||| || ||||| ||||| || ||||| || || ||||| || ||||| Sbjct 409 CCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGCC 468 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || || ||||| |||||| |||| | || ||||| || || ||| Sbjct 469 AATGTCCGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGGA 528 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||| ||||| || | ||| ||| ||| | || | ||||| ||| || ||| Sbjct 529 ATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCAACT 588 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || |||||||| ||||| | ||| || ||||| || ||||| Sbjct 589 TCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 635 Score = 111 bits (122), Expect = 1e-19 Identities = 125/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 29623 GTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATA 29682 ||||| ||| || || ||||| |||||| | |||| || || || || || ||||| Sbjct 16 GTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATG 75 Query 29683 CCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTC 29741 || || ||||| || |||||||| |||||| | || | ||||| || || ||||| Sbjct 76 CCTTCCTTGTCCTG-AATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTC 134 Query 29742 AAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| || ||||| ||||||||||| || ||||| |||||||| Sbjct 135 AAGAGTGATTGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCAT 179 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||| || ||||| ||||| ||||| || || || ||||||||||| || Sbjct 865 CCACCTCTCAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCAGCC 924 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || || |||||| | || | || ||||| || || ||| Sbjct 925 AATGTCCGGCCATCCTCCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGAGGA 984 Query 29680 ATACCCTCTTTGTCTTG 29696 |||||||| ||||| || Sbjct 985 ATACCCTCCTTGTCCTG 1001 >seq662336 Length=3756 Score = 125 bits (138), Expect = 5e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | | || || | ||||| ||||| |||||||| ||||||||||| || Sbjct 300 TCCTCCCCTAAGCCTCAAAACAAGGTGAAGTGTGGACTCTTTTTGGATGTTATAATCTGC 241 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || |||||| ||| || ||||||||||||||| | |||||||| |||||||| || || Sbjct 240 AAGAGTGCGACCATCTTCCAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGG 181 Query 29679 AATACCCTCTTTGTCTTGTAAT 29700 ||| || || ||||| || ||| Sbjct 180 AATGCCTTCCTTGTCCTGAAAT 159 >seq109077 Length=726 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| |||||||| || || || || ||||| |||||||| ||||| ||| Sbjct 194 CCACCACGCAGACGAAGCACCAAGTGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGCA 253 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || ||||| || | ||||| || ||||| ||||| ||| Sbjct 254 AGAGTTCGCCCATCCTCAAGCTGCTTGCCCGCGAAAATCAACCTCTGCTGGTCCGGTGGA 313 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| ||||| || ||| || | ||| ||| | || | || || || || || Sbjct 314 ATCCCCTCCTTGTCCTG-AATCTTCGCTTTCACATTGTCGATGGTATCCGAGCTCTCAAC 372 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || ||||||||||| || || || || |||||||| Sbjct 373 CTCTAAGGTAATTGTCTTGCCAGTTAAAGTCTTCACGAAGATCTGCAT 420 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| ||||| || || ||||| |||||||| |||||||| | || || Sbjct 434 CGGAGGACCAAGTGAAGTGTTGACTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGCCG 493 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || || | |||| || ||||| ||||| ||||| ||||| || Sbjct 494 TCTTCCAGCTGCTTCCCTGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTA 553 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || ||| || | || | ||||| || ||| || || ||||| || Sbjct 554 TCCTGGATCTTAGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCTAGAGTAATT 613 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || | ||||||||||| ||||||||| Sbjct 614 GTCTTTCCGGTCAGAGTTTTAACAAAAATCTGCATT 649 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 29596 TCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATAT 29655 || || || ||||| || ||||| | ||| | ||| || || || || ||||| | Sbjct 2 TCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCAGCGAAG 61 Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGT 29714 |||||||| ||||||||||| || || || || ||||| || ||| |||| ||| ||| | Sbjct 62 ATCAATCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTG-AATCTTTGCTTTCACATT 120 Query 29715 TTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774 || | ||||| ||| || || || || || || || || ||||| | || || || Sbjct 121 ATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTCCCAGTCAGAGTCTTCAC 180 Query 29775 AAATATCTGCAT 29786 || || ||||| Sbjct 181 GAAGATTTGCAT 192 >seq754749 Length=725 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 29649 AGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTT 29708 |||| | ||||| |||||||| || || || |||||||| |||||||| | |||| || Sbjct 725 AGCAAAAATCAACCTTTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGGATTTTTGCCTT 666 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | || |||||| || |||||||||||||| ||||| ||||| | ||| Sbjct 665 AACATTGTCAATGGTATCAGAACTCTCAACTTCAAGAGTTATGGTTTTTCCAGTAAGGGT 606 Query 29769 TTTAACAAATATCTGCAT 29786 |||||||| |||||||| Sbjct 605 CTTAACAAAGATCTGCAT 588 >seq702768 Length=508 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || || || || |||||||| ||||| |||| || ||| Sbjct 316 ACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCGACC 257 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || ||| | || | || |||||||| || || || || || || Sbjct 256 ATCCTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTT 197 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || |||||||| || ||| | |||| |||||| || || || || || || | Sbjct 196 GTCCTG-AATTTTTGCCTTCACATTATCTATAGTGTCTGAGCTCTCAACCTCTAGTGTAA 138 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || | ||| || |||||||||||||| Sbjct 137 TTGTCTTTCCCGTCAGGGTCTTCACAAATATCTGCAT 101 >seq689433 Length=414 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| ||||| || || |||||||| ||||| |||| || ||| Sbjct 237 ACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGACC 178 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || || | |||| || |||||||| || || || ||||| || Sbjct 177 ATCCTCCAACTGCTTCCCTGCGAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTT 118 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || |||||| | || ||| | |||| || || || || || || || || | Sbjct 117 GTCCTG-AATTTTGGCCTTCACATTATCTATGGTATCTGAGCTCTCCACCTCTAGTGTGA 59 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || | ||| || |||||||||||||| Sbjct 58 TCGTCTTTCCCGTCAGGGTCTTCACAAATATCTGCAT 22 >seq620935 Length=1758 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| || || || || || || || || || || || || | ||| || Sbjct 35 CGGAGCACCAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGCTAGGGTTCGGCCG 94 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||||||||| | || | | ||||| |||||||| || || || ||| Sbjct 95 TCCTCCAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTG 154 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || |||||| | || | |||||||| ||| || || || ||||| Sbjct 155 TCTTGGATCTTGGCCTTGACATTATCGATCGTGTCAGATGATTCAACCTCTAGGGTTATG 214 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || |||| ||| || || || |||||||| || Sbjct 215 GTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATCTT 252 >seq113432 Length=226 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || || |||||| | ||||| |||||||| || || || || || || || Sbjct 223 ATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCTTCCTT 164 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| || ||| | || || || || || || |||||||| || || Sbjct 163 GTCTTGGATTTTCGCCTTTACATTGTCAACTGTATCTGAGCTCTCAACTTCAAGGGTGAT 104 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || || | || ||||||||||| |||||| Sbjct 103 GGTCTTTCCGGTGAGTGTCTTAACAAATATTTGCATT 67 >seq313781 Length=385 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 29596 TCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATAT 29655 || || || ||||| || ||||| | ||| | ||| || || || || || || | Sbjct 384 TCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCGGCGAAG 325 Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGT 29714 |||| || ||||||||||| || || ||||| ||||| || ||| |||| ||||||| | Sbjct 324 ATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTG-AATCTTTGCTTTGACATT 266 Query 29715 TTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774 || | ||||| ||| || || || || || || || || ||||| | || || || Sbjct 265 ATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTCAC 206 Query 29775 AAATATCTGCAT 29786 || || ||||| Sbjct 205 GAAGATTTGCAT 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381669299738625