Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq516297 262 4e-65 seq551508 248 9e-61 seq545415 168 7e-37 seq345357 147 2e-30 seq655765 132 5e-26 seq493281 107 2e-18 seq589273 105 7e-18 seq86712 105 7e-18 seq161073 100 3e-16 seq212858 95.1 1e-14 seq666543 87.8 2e-12 >seq516297 Length=515 Score = 262 bits (290), Expect = 4e-65 Identities = 370/516 (72%), Gaps = 3/516 (1%) Strand=Plus/Minus Query 157507 TCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCA 157566 || |||| ||||||||| || |||||||||||||| |||| ||| | || ||| |||| Sbjct 515 TCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCTAGGCT 456 Query 157567 GAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGA 157626 |||||||| || |||||||| | ||||||||| | ||| | | ||| ||||| ||||| Sbjct 455 GAGCACAACATCCTTATGCACTCATTCCACATGTT-GGCATAGTTGGTGTATTTGGTGGT 397 Query 157627 TCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTG-TTCGTGAAACAAC 157685 || | ||| || |||||| || | || || || | | ||| || | ||||| | Sbjct 396 TCCCTATTCAGTGTTATGCATGGTTCATTGGTAACCTC-TAGTTTGATTAGGGAAACCAT 338 Query 157686 TGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACAT 157745 |||| || || ||| ||||||| |||| |||||| ||||| || || || || Sbjct 337 AGAAAATGAATCTGCGAATGTAGGTTACACATTCGATCAAGATGAAGAAACTTATAATAT 278 Query 157746 CGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAG 157805 ||||| || ||||| | ||||| |||| |||||||| ||| |||||| || Sbjct 277 TACGGCTGCTCATGGTTATTCTGGTCGATTGATTTTCCAATATGCTATATTCAATAATTC 218 Query 157806 CAGAAGTCTTCACTTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACT 157865 | | | || |||||||| | || |||||| | || || |||||||||| ||| | Sbjct 217 TCGTTCTTTACATTTCTTCCTAGTTGCTTGGCCTATAGTAGGTATCTGGTTCATTGCTTT 158 Query 157866 GGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGA 157925 || | | ||| || | ||| |||| || |||||||| |||||||| || || |||| Sbjct 157 AGGTATCAACACTCTGACTTTCTACCTAAATGGTTTCAATTTCAACCAATCTATAGTTGA 98 Query 157926 TGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTAT 157985 | |||| ||| |||| | || || | ||| ||| | | || || ||| |||||||| Sbjct 97 TAGTCAAGGTTGTGTAATTAATACTTAGGCTGATATTATAAATCGTGCTAACCTTGGTAT 38 Query 157986 GGAAGTTATGCATGAGCGTAACGCACACAACTTCCC 158021 ||||||||||||||| ||||| || || || ||||| Sbjct 37 GGAAGTTATGCATGAACGTAATGCTCATAATTTCCC 2 >seq551508 Length=510 Score = 248 bits (274), Expect = 9e-61 Identities = 348/486 (72%), Gaps = 2/486 (0%) Strand=Plus/Plus Query 157378 TATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTT 157437 || ||||| ||||||||||||||| || |||| | | ||||||||| ||||| |||| Sbjct 18 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGCTATGCGCCCTTGGATTGTTGTT 77 Query 157438 GCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAA 157497 || || || || || || || ||||| | ||| | ||| | |||| || | |||||| Sbjct 78 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAA 137 Query 157498 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTC 157557 || || | |||| ||||||||| | |||||||||||||| |||| ||| | || Sbjct 138 GGAAGCTTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTCATGATTGTA 197 Query 157558 TTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTA 157617 ||||||| |||||||| || |||||||| || ||||||||| | | || ||||| ||| Sbjct 198 TTCCAGGTTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGATGTAGCTGGTGTA 257 Query 157618 TTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTG-TTCG 157676 ||||| || || | ||| |||||||| || | || || | || | ||| | | Sbjct 258 TTCGGCGGTTCCCTATTCAGAGCTATGCATGGTTCCTTGGTAACCT-CTAGTTTGATAAG 316 Query 157677 TGAAACAACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGAC 157736 ||||| || ||| || || || |||||||| ||||||||||| ||||| || Sbjct 317 GGAAACCACAAAAAATGAATCTGCTAATGCAGGTTACAAATTCGGTCAAGAGGAAGAAAC 376 Query 157737 GTACAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATT 157796 || || || || ||||| | ||||| || || || |||| |||||||| ||| || Sbjct 377 TTATAATATTGTGGCTGCTCCAGGTTATTTTGGCCGATTGATATTCCAATATGCTAGTTT 436 Query 157797 CAACAACAGCAGAAGTCTTCACTTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTT 157856 ||| || | | | | |||||||| || || |||||||| || || |||||||| Sbjct 437 CAATAATTCATGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 496 Query 157857 CACTGC 157862 |||||| Sbjct 497 CACTGC 502 >seq545415 Length=298 Score = 168 bits (186), Expect = 7e-37 Identities = 215/296 (73%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 157717 TTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTG 157776 ||||||||||| ||||| || || || || || ||||| || ||||| || || | || Sbjct 1 TTCGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCTGATTG 60 Query 157777 ATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGCCGCATGG 157836 |||||| |||| ||| ||| | || | | | || |||||| | || || ||| Sbjct 61 ATCTTCTAATATGCTAGTTTCTATAATTCTCGTTCTTTACATTTCTTCATAGCTGCTTGG 120 Query 157837 CCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAAC 157896 | ||| || || |||||||||| ||| | || | |||| ||| | |||||||| || Sbjct 121 CTTGTAGTAGGTATCTGGTTCATTGCTTTAGGTATCGGCACTATGACTTTCAACCTAAAT 180 Query 157897 GGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCA 157956 |||||||| || ||||| || || ||||| | || |||||||| | || || ||||| Sbjct 181 GGTTTCAATTTTAACCAATCTATAGTTGATAGCCAAGGTCGTGTAATTAATACTTGGGCT 240 Query 157957 GATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACA 158012 ||| | | ||||| ||| ||||||||||||||||||||||| |||| || || Sbjct 241 GATTTTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCA 296 >seq345357 Length=322 Score = 147 bits (162), Expect = 2e-30 Identities = 201/281 (72%), Gaps = 2/281 (1%) Strand=Plus/Minus Query 159147 CGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTT 159206 || || || ||||| || || || ||| ||| |||| ||||||||| || ||| Sbjct 291 CGACCTTATAATGCAATCGCATTATCTATTCCAATTGTTGTTTTTGTTTCTGTA--CCTA 234 Query 159207 ATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATA 159266 || || ||||| |||||||| ||||||| || | || ||||| | || | ||| Sbjct 233 ATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGTGCCTAGTTTTGGTATAGCATCTATA 174 Query 159267 TTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATG 159326 || | ||| | ||||| | |||||||| || ||||||||| | ||||| || |||||| Sbjct 173 TTTTGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATG 114 Query 159327 ATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTT 159386 |||||||||| ||| | | || | || || |||| ||||||||||| | || ||| Sbjct 113 ATGGGAGTTGTCGGTGTATTGGGCGTTGCTCTGCTATGCGCTATTCATGGTGCTACCGTT 54 Query 159387 GAAAATACATTATACGAGGATGGAGANNNNGCAAACACCTT 159427 |||||||| |||| || ||||| || ||||| || || Sbjct 53 GAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 13 >seq655765 Length=3443 Score = 132 bits (146), Expect = 5e-26 Identities = 251/371 (68%), Gaps = 0/371 (0%) Strand=Plus/Minus Query 159402 GAGGATGGAGANNNNGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACT 159461 || ||||| || ||||| || ||| ||| ||| || || || || || | ||| Sbjct 2265 GAAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCATCTTAAACTAAGAAAACT 2206 Query 159462 TATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAAC 159521 ||||| ||||||| ||| ||||| || | ||| || ||||| ||| ||||| || Sbjct 2205 TATTCAATGGTCATTGCTAACCGTTTTTCGTCCCAAATCTTTAAGGTTGTTTTTTCCAAT 2146 Query 159522 AAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGT 159581 || | | | ||||||||| |||| ||||| || || | | |||||| | Sbjct 2145 AAATGTTTTTTACATTTCTTTGTGTTATTTGTACCAGTAACCAATTTATGGATGAGTGCT 2086 Query 159582 ATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATC 159641 |||| | | ||||| ||||| || | |||| || | ||||| ||||| ||| Sbjct 2085 CTTGGAGTAGTCGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAATC 2026 Query 159642 AGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAA 159701 | || |||||||| |||||||| | ||||||||||| || ||||| || || ||| Sbjct 2025 CATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCCTAAACGAA 1966 Query 159702 GGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAA 159761 || | | | ||||| || || | ||||| || |||||||| | || ||| | || Sbjct 1965 GGTATTCATACTTGGATGACAATTCAAGATCAGCCTTATGAAAACCTTATATTCTCTGAG 1906 Query 159762 GAAGTTCTACC 159772 || |||||||| Sbjct 1905 GAGGTTCTACC 1895 >seq493281 Length=200 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 157195 GAACCAGTTGCTGGTTCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCT 157254 ||||| ||| |||| ||||| | ||||| ||||| || ||||||||||| | ||||| Sbjct 199 GAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATCATTCCT 140 Query 157255 TCTTCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAG 157314 |||| || || ||| | ||||| ||||| || | ||||||| |||| ||||||| Sbjct 139 ACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATAGGAAGCAACATCCGTTGATGAA 80 Query 157315 TGGCTTTACAACGGTGGTCCTT 157336 ||| | ||||| |||||||||| Sbjct 79 TGGTTATACAATGGTGGTCCTT 58 >seq589273 Length=208 Score = 105 bits (116), Expect = 7e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 159471 GTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGG 159530 ||||| || ||| |||| ||||| || ||||| || |||| ||||| || || | ||| Sbjct 1 GTCACCGCTAACTGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGG 60 Query 159531 CTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATT 159590 | |||||||||||||| ||||| || || | | | |||||| | |||| | Sbjct 61 TTACATTTCTTTATGTTATTTGTACCAGTAACCGATTTATGGATGAGTGCTTTTGGAGTA 120 Query 159591 ATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCA 159650 | ||||| ||| | || | ||||| || || || || || || ||| | ||||| Sbjct 121 GTCGGTCTGGCTTTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCG 180 Query 159651 GAAGATCCAGAATTTGAAACGTTCTACA 159678 |||||||| |||||||| || ||||||| Sbjct 181 GAAGATCCTGAATTTGAGACTTTCTACA 208 >seq86712 Length=407 Score = 105 bits (116), Expect = 7e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 159645 GCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGA 159704 ||||| |||||||| |||||||| || ||||||||||| || ||||| | |||||||| Sbjct 2 GCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGT 61 Query 159705 CTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAA 159764 | ||||||||| |||| || ||||| | ||||||||| | || ||||| | || Sbjct 62 ATTCGTGCTTGGATGGCGGCTCAAGATCAGCTTCATGAAAACCTTATATTCCCTAAGGAG 121 Query 159765 GTTCTACC 159772 |||||||| Sbjct 122 GTTCTACC 129 >seq161073 Length=246 Score = 100 bits (110), Expect = 3e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 157307 TTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTTCCTGATCG 157366 ||||||| ||| | ||||| ||||| |||| | || | || | |||| | | | | Sbjct 4 TTGATGAATGGTTATACAATGGTGGCCCTTATGAGCTAATTGTTCTACACTACTTACTTG 63 Query 157367 GCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCT 157426 | | | || ||||| ||||||| ||||||| || || | ||||||||| || | Sbjct 64 GTGTAGCTTTTTACATGGGTCGTGAGTAGGAACTTAGTTTCCATCTAGGTATGCACCATT 123 Query 157427 GGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATC 157486 |||| |||||| || | || || | || ||| | | ||| || ||| | |||| | Sbjct 124 GGATTGTTGTTGCATATTTAGCTCCTATTGCAGCTACTACTGCTGTTTTCTTGATCTACC 183 Query 157487 CTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACT 157546 | | ||| |||| || || |||| ||||||||| || |||||||||||||| |||| Sbjct 184 CAATTGGTTAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACT 243 >seq212858 Length=258 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 157900 TTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGAT 157959 ||||| |||||||| || | ||||| | || |||||||| | || || ||| | ||| Sbjct 258 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGTGTAATTAATACTTGGACTGAT 199 Query 157960 GTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTC 158019 | | ||||| ||| ||||||||| ||||||||||||| ||||| || || || ||| Sbjct 198 ATTATCAACCGTGCTAACCTTGGTATGAAAGTTATGCATGAACGTAATGCTCATAATTTC 139 Query 158020 CCACTGGATCTTGCT 158034 || || ||||| ||| Sbjct 138 CCTCTAGATCTAGCT 124 >seq666543 Length=3475 Score = 87.8 bits (96), Expect = 2e-12 Identities = 187/278 (67%), Gaps = 1/278 (0%) Strand=Plus/Plus Query 157247 TTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCAC 157306 || ||||| ||| | || || || | || || || || || |||||||| ||||| Sbjct 2084 TTATTCCTACTTTTGAAGCTATATGTTTGCATTTTTATCCAATATGGGAAGCCGCATCTG 2143 Query 157307 TTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTTCCTGATCG 157366 ||||||| | | | ||||| | |||||||| | || | ||| | |||||| | | Sbjct 2144 TTGATGAATAGTTATACAATGATGGTCCTTATAAGCTAATTGTCCTACACTTCTTATTTA 2203 Query 157367 GCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCT 157426 | | | || ||||| ||||||||||||||| || || ||| |||||||||| | Sbjct 2204 GTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCATTTGGGTATGCGCCTTT 2263 Query 157427 GGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATC 157486 ||| |||| | || || || | || | ||| | | || || ||| | |||| | Sbjct 2264 AGATTGTTGTTACATATTCAGCTTCTGTTACAGCTACTACTGTTGTTTTCTTGATCTACC 2323 Query 157487 CTTTCGGTCAAGG-TTCTTTCTCCGATGCTATGCCTCT 157523 | | |||||||| |||| | | ||| |||||||| Sbjct 2324 CAATTGGTCAAGGAAGCTTTTTTCAATGGCATGCCTCT 2361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540119912490000