Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq702768 150 3e-31 seq736048 136 8e-27 seq689433 132 9e-26 seq611781 116 7e-21 seq109077 111 3e-19 seq726932 109 1e-18 seq113432 105 1e-17 seq313781 102 2e-16 >seq702768 Length=508 Score = 150 bits (166), Expect = 3e-31 Identities = 165/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| |||||||| || ||||| || || ||||||| ||| | | ||| Sbjct 316 ACGAAGAACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCGACC 257 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | || || || |||||||| || || || ||||||||||| || |||||||| Sbjct 256 ATCCTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTT 197 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || ||||| ||||| || ||||| || || || || | || | || || || | || | Sbjct 196 GTCCTGAATTTTTGCCTTCACATTATCTATAGTGTC-TGAGCTCTCAACCTCTAGTGTAA 138 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || |||| ||||| |||||||||||||| Sbjct 137 TTGTCTTTCCCGTCAGGGTCTTCACAAATATCTGCAT 101 >seq736048 Length=1016 Score = 136 bits (150), Expect = 8e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | ||| || || ||||| ||||||||||| || |||| | | ||| ||| Sbjct 193 CGGAGAACAAGGTGAAGGGTTGATTCCTTCTGTATATTGTAGTCAGCCAAAGTTCGACCA 252 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 |||||||| || || |||||||||||||| || || || || || || || |||||||| Sbjct 253 TCTTCTAGCTGCTTACCAGCAAAGATTAGCCTCTGCTGGTCGGGTGGAATACCTTCCTTG 312 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || || |||||||| ||||| || || || || | || || || | || || Sbjct 313 TCCTGGATTTTTGCTTTCACATTGTCGATGGTGTCTGAACTCTCAACCTCAAGGGTGATA 372 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || | ||||| |||||||| ||||| Sbjct 373 GTTTTACCAGTAAGGGTCTTCACAAATATTTGCAT 407 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||||||| ||||| ||||| || |||||||| ||||| || || || || | Sbjct 409 CCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGCC 468 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| || ||||| |||||||| || || || || || ||||| || Sbjct 469 AATGTCCGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGGA 528 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || || || ||||| ||||| || || || || | || ||| Sbjct 529 ATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCAACT 588 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || || | ||||| ||||| || ||||| Sbjct 589 TCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 635 Score = 122 bits (134), Expect = 2e-22 Identities = 124/159 (78%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || || ||||||||||||||||| || || ||||| || ||||| || |||||| Sbjct 22 CCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCC 81 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGT 82771 || || ||||| ||||| || ||||| ||||| || || | || | || ||||| | ||| Sbjct 82 TTGTCCTGAATTTTTGCCTTGACATTGTCAATTGTGTC-TGAGCTCTCAACTTCAAGAGT 140 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || || || ||||| ||||| |||||||| Sbjct 141 GATTGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCAT 179 Score = 104 bits (114), Expect = 5e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| ||| ||||| ||||| || || || || ||||| || |||||||||| Sbjct 865 CCACCTCTCAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCAGCC 924 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || || || || || ||||||||||| || || || || |||||||| Sbjct 925 AATGTCCGGCCATCCTCCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGAGGA 984 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTAC 82735 || || ||||| || || |||||||| || || Sbjct 985 ATACCCTCCTTGTCCTGGATCTTTGCCTTCAC 1016 >seq689433 Length=414 Score = 132 bits (146), Expect = 9e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||| ||||| || || ||||| || || ||||||| || | | ||| Sbjct 237 ACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGTGTCCGACC 178 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | || || || || ||||| || || || ||||||||||| || || ||||| Sbjct 177 ATCCTCCAACTGCTTCCCTGCGAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTT 118 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTA 82773 || ||||| || || || ||||| || || ||||| | || | || || || | || | Sbjct 117 GTCCTGAATTTTGGCCTTCACATTATCTATGGTATC-TGAGCTCTCCACCTCTAGTGTGA 59 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || |||| ||||| |||||||||||||| Sbjct 58 TCGTCTTTCCCGTCAGGGTCTTCACAAATATCTGCAT 22 >seq611781 Length=262 Score = 116 bits (128), Expect = 7e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 82650 CTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCT 82709 || || || || || || ||||||||||| || | ||||| || ||||| || |||||| Sbjct 255 CTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGGATTCCT 196 Query 82710 TCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAA 82769 ||||| ||||| || || || |||||||| || || |||||| ||| || || | Sbjct 195 TCCTTGTCTTGGATTTTCGCCTTTACATTGTCGATTGTATCAGAGCTTTCCACCTCAAGC 136 Query 82770 GTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || ||||| || |||| |||||||||||||| |||||| Sbjct 135 GTGATGGTCTTTCCAGTCAGTGTCTTTACAAATATTTGCATT 94 >seq109077 Length=726 Score = 111 bits (122), Expect = 3e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || ||||| || || || || | || | || || ||||| || || || ||||| ||| Sbjct 2 TCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCAGCGAAG 61 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || | ||| || ||||| || || || |||||||| || |||||||||||||| ||||| Sbjct 62 ATCAATCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACATTA 121 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 ||||| || || | || || |||| || || ||||| || |||| ||||| || Sbjct 122 TCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTCCCAGTCAGAGTCTTCACG 181 Query 82800 AATATCTGCAT 82810 || || ||||| Sbjct 182 AAGATTTGCAT 192 >seq726932 Length=530 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || || | ||| ||| ||| Sbjct 35 CGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCG 94 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || ||||||||||| ||||| || | || || || || || || |||||||| Sbjct 95 TCCTCCAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTG 154 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || || || ||| | ||| || || | ||||| Sbjct 155 TCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGACGATTCAACCTCTAGGGTTATG 214 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | || || || || |||||||| Sbjct 215 GTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 249 >seq113432 Length=226 Score = 105 bits (116), Expect = 1e-17 Identities = 121/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || || || ||||||||||| || | ||||| || || || || ||||||||| Sbjct 225 CCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCTTCC 166 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGT 82771 || ||||| || || || |||||||| |||| ||||| | || | || ||||| | || Sbjct 165 TTGTCTTGGATTTTCGCCTTTACATTGTCAACTGTATC-TGAGCTCTCAACTTCAAGGGT 107 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| || || | ||||| |||||||| |||||| Sbjct 106 GATGGTCTTTCCGGTGAGTGTCTTAACAAATATTTGCATT 67 >seq313781 Length=385 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || ||||| || || || || | || | || || ||||| || || || || || ||| Sbjct 384 TCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCGGCGAAG 325 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || || || || ||||| || || || || ||||| || |||||||||||||| ||||| Sbjct 324 ATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGAATCTTTGCTTTGACATTA 265 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 ||||| || || | || || |||| || || ||||| || |||| ||||| || Sbjct 264 TCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTCACG 205 Query 82800 AATATCTGCAT 82810 || || ||||| Sbjct 204 AAGATTTGCAT 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972315403826375