Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq620935 125 7e-24 seq750760 122 8e-23 seq726932 113 4e-20 seq736048 111 2e-19 seq109077 105 6e-18 seq702768 87.8 2e-12 seq113432 82.4 7e-11 >seq620935 Length=1758 Score = 125 bits (138), Expect = 7e-24 Identities = 149/200 (75%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTG 133520 ||| ||||| ||||| |||||||| ||| | | || || || ||||| ||||| ||| Sbjct 52 GGTTGACTCCTTCTGGATATTGTAGTCGGCTAGGGTTCGGCCG--TCCTCCAGCTGTTTG 109 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||| ||||||||||| || ||||||||||||||||| |||||| | Sbjct 110 CCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCC 169 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | |||||| | | || || || | ||| | ||| || || || || Sbjct 170 TTGACATTATCGATCGTGTCAGATGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGG 229 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || |||||||||||||| Sbjct 230 GTCTTCACGAAAATCTGCAT 249 >seq750760 Length=1299 Score = 122 bits (134), Expect = 8e-23 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGA 133512 || || | ||| ||||| ||||| || ||||| || | | || || || ||||||| Sbjct 340 AAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTCCGGCCG--TCCTCGA 283 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || ||| | ||||| || |||||||| ||||| |||||||||||||| || Sbjct 282 GCTGCTTCCCGGCGAATATGAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGA 223 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | || | ||||| | || |||||| || | ||| | ||| || | Sbjct 222 TCTTGGCCTTCACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTTATGGTCTTAC 163 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || ||||| ||||| |||||||| Sbjct 162 CCGTTAGGGTTTTCACGAAGATCTGCAT 135 >seq726932 Length=530 Score = 113 bits (124), Expect = 4e-20 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || ||||| ||| | | || || || ||||| ||||| || Sbjct 52 GGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCG--TCCTCCAGCTGTTTT 109 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||| ||||||||||| || ||||||||||||||||| |||||| | Sbjct 110 CCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCC 169 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | ||||| | | || || || | ||| | ||| || || || || Sbjct 170 TTGACATTGTCGATGGTGTCAGACGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGG 229 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| ||||| |||||||| Sbjct 230 GTTTTCACGAAGATCTGCAT 249 >seq736048 Length=1016 Score = 111 bits (122), Expect = 2e-19 Identities = 153/209 (73%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| || || ||||| ||| || | | | |||||||| Sbjct 658 AAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGCCAATGTCCGGCCA-TCCTCGAG 716 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || |||| ||||||||| || || || || |||||||| ||| Sbjct 717 CTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGAT 776 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||||| |||| | |||| ||||| | | ||| || || | ||||| ||||| | Sbjct 777 -TTTTGCTTTGACATTATCAATGGTGTCTGAGCTCTCAACTTCAAGGGTGATAGTTTTTC 835 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661 | || || || || || ||||| |||||| Sbjct 836 CAGTGAGGGTCTTCACAAAAATTTGCATG 864 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || || |||||||||||||| || ||| || ||| | || || |||||||| | Sbjct 210 GGTTGATTCCTTCTGTATATTGTAGTCAGCCAAAGTTCGACCA-TCTTCTAGCTGCTTAC 268 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 | || | || |||| |||||||||||| || || ||||||||||| ||| |||||| Sbjct 269 CAGCAAAGATTAGCCTCTGCTGGTCGGGTGGAATACCTTCCTTGTCCTGGAT-TTTTGCT 327 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | || | ||||| | ||| || || | ||||| ||||| || || || Sbjct 328 TTCACATTGTCGATGGTGTCTGAACTCTCAACCTCAAGGGTGATAGTTTTACCAGTAAGG 387 Query 133641 GTTTTTACGAAAATCTGCATG 133661 || || || || || |||||| Sbjct 388 GTCTTCACAAATATTTGCATG 408 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||| || || || | || |||| ||| ||||| ||||| |||||||||||| Sbjct 25 TCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCCTTG 84 Query 133566 TCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||||| ||||| | |||| ||||| | | ||| || || | |||| Sbjct 85 TC-CTGAATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCAAGAGTGAT 143 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || | || || || ||||||||||| Sbjct 144 TGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCAT 179 >seq109077 Length=726 Score = 105 bits (116), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||||||||| || |||||||| | | || || || || || |||||||| | Sbjct 452 GTTGACTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGCCG--TCTTCCAGCTGCTTCC 509 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| |||| |||| ||||||||| || || ||||| ||||| || |||||| | Sbjct 510 CTGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCCTGGATCTTAGCTT 569 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||||| | || || || | || | || || |||||||||| Sbjct 570 TCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCTAGAGTAATTGTCTTTCCGGTCAGAG 629 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || ||||||||||| Sbjct 630 TTTTAACAAAAATCTGCAT 648 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||||||||| || |||||||| | | || | ||||| ||| Sbjct 215 AAGTGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTTCGCCCATCCTCAAGC 274 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||||||| |||| | || ||||||||| || || || || |||||||| ||| Sbjct 275 TGCTTGCCCGCGAAAATCAACCTCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGAATC 334 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || || | | || | || || | | ||| || || | ||| | || ||||| Sbjct 335 TTCGCTTTCACATTGTCGATGGTATCCGAGCTCTCAACCTCTAAGGTAATTGTCTTGCCA 394 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || | ||| || ||||| ||||||||| Sbjct 395 GTTAAAGTCTTCACGAAGATCTGCATG 421 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528 ||| ||||| || ||||| || ||| || | || || |||||||| || ||| | Sbjct 1 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCAGCGAA 60 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 || | | |||||| || || ||||| ||||||||||| |||||| || | | Sbjct 61 GATCAATCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACATT 120 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 |||| ||||||| |||||| || | |||| ||| || || |||||||| || || Sbjct 121 ATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTCCCAGTCAGAGTCTTCAC 180 Query 133649 GAAAATCTGCAT 133660 ||| || ||||| Sbjct 181 GAAGATTTGCAT 192 >seq702768 Length=508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || |||||||| | | || ||| | ||||| | |||||| || Sbjct 297 GTAGACTCCTTCTGAATGTTGTAATCAGCAAGAGTCCGACCA-TCCTCCAACTGCTTCCC 239 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 || | ||||||| |||||| || |||||||| ||||||||||| ||| ||||| || Sbjct 238 TGCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTC-CTGAATTTTTGCCT 180 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| | | ||| || || | || | || || || ||||| | Sbjct 179 TCACATTATCTATAGTGTCTGAGCTCTCAACCTCTAGTGTAATTGTCTTTCCCGTCAGGG 120 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 119 TCTTCACAAATATCTGCAT 101 >seq113432 Length=226 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| |||||||| || || |||| | || |||||||| || ||||| ||||||||| Sbjct 222 TCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCTTCCTTG 163 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||| || ||| | | ||||| || || | | ||| || || | ||||| | Sbjct 162 TCTTGGATTTTCGCCTTTACATTGTCAACTGTATCTGAGCTCTCAACTTCAAGGGTGATG 103 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || || || || || ||||| Sbjct 102 GTCTTTCCGGTGAGTGTCTTAACAAATATTTGCAT 68 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478851718095000