Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq551508 286 1e-72 seq516297 262 1e-65 seq545415 217 4e-52 seq212858 111 5e-20 seq161073 91.5 4e-14 seq493281 82.4 2e-11 seq666543 80.6 8e-11 >seq551508 Length=510 Score = 286 bits (316), Expect = 1e-72 Identities = 363/494 (73%), Gaps = 4/494 (1%) Strand=Plus/Plus Query 28959 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGT 29018 ||||||||| || |||||||||||||| | || || | ||| | || |||||| ||| Sbjct 17 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGCTATGCGCCCTTGGATTGTTGT 76 Query 29019 CGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCA 29078 ||||| |||||||| || ||||| || |||| ||||| | |||||||| | ||||| Sbjct 77 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCA 136 Query 29079 AGG-TTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGG 29137 ||| |||||| || | |||||| | | || || || || ||||||| |||| | | Sbjct 137 AGGAAGCTTTTA-TGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTCATGATTG 195 Query 29138 TGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAG 29197 | ||||| | || || ||||| || |||||||| ||||||||| | | || ||||| | Sbjct 196 TATTCCAGGTTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGATGTAGCTGGTG 255 Query 29198 TGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TG 29256 | ||||| || || ||||| || || ||||| ||||| | || || | || | ||| | Sbjct 256 TATTCGGCGGTTCCCTATTCAGAGCTATGCATGGTTCCTTGGTAACCT-CTAGTTTGATA 314 Query 29257 CGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAG 29316 | || || || || | ||| || |||||||| || || ||||| ||||| Sbjct 315 AGGGAAACCACAAAAAATGAATCTGCTAATGCAGGTTACAAATTCGGTCAAGAGGAAGAA 374 Query 29317 ACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCT 29376 |||||||| || || || |||| ||||| ||||| || ||||| |||||||||||| | Sbjct 375 ACTTATAATATTGTGGCTGCTCCAGGTTATTTTGGCCGATTGATATTCCAATATGCTAGT 434 Query 29377 TTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGG 29436 ||||||||| ||||| || | |||||||| ||||| ||||| || ||||| || ||| Sbjct 435 TTCAATAATTCATGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 494 Query 29437 TTCGCTGCCTTGGG 29450 ||| |||| || || Sbjct 495 TTCACTGCTTTAGG 508 >seq516297 Length=515 Score = 262 bits (290), Expect = 1e-65 Identities = 367/509 (72%), Gaps = 7/509 (1%) Strand=Plus/Minus Query 29098 ATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAAC 29157 |||||| | || || || || || ||||||| |||| | || ||| | || || || ||| Sbjct 506 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCACAAC 447 Query 29158 ATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTT 29217 || || |||||| | ||||||||| ||| | | | ||| || || ||||| || ||||| Sbjct 446 ATCCTTATGCACTCATTCCACATGTTGG-CATAGTTGGTGTATTTGGTGGTTCCCTATTC 388 Query 29218 AGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGCGTGAGACGACTGAAGACAT 29276 |||| ||||| ||||| | || || || | | ||| | | || || | ||| | Sbjct 387 AGTGTTATGCATGGTTCATTGGTAACCTC-TAGTTTGATTAGGGAAACCATAGAAAATGA 329 Query 29277 CTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGC 29336 ||| ||| ||||||| || | ||||| ||||| |||||||| || || || Sbjct 328 ATCTGCGAATGTAGGTTACACATTCGATCAAGATGAAGAAACTTATAATATTACGGCTGC 269 Query 29337 TCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCT 29396 ||| ||||| | ||| || ||||| |||||||||||| ||||||||| |||||| | Sbjct 268 TCATGGTTATTCTGGTCGATTGATTTTCCAATATGCTATATTCAATAATTCTCGTTCTTT 209 Query 29397 ACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTC 29456 ||| |||||||| | ||| ||||| | ||||| || |||||| ||| || || | || Sbjct 208 ACATTTCTTCCTAGTTGCTTGGCCTATAGTAGGTATCTGGTTCATTGCTTTAGG--TATC 151 Query 29457 TACAAT--GGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAAT 29514 ||| | | | || | || || ||||| || || ||||| || | | || | | Sbjct 150 AACACTCTGACTTTCTACCTAAATGGTTTCAATTTCAACCAATCTATAGTTGATAGTCAA 91 Query 29515 GGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTA 29574 ||| |||| |||||||||| ||||||| || | ||||| |||||||| || | ||||| Sbjct 90 GGTTGTGTAATTAATACTTAGGCTGATATTATAAATCGTGCTAACCTTGGTATGGAAGTT 31 Query 29575 ATGCATGAGCGTAATGCTCATAACTTCCC 29603 |||||||| |||||||||||||| ||||| Sbjct 30 ATGCATGAACGTAATGCTCATAATTTCCC 2 >seq545415 Length=298 Score = 217 bits (240), Expect = 4e-52 Identities = 227/298 (76%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 29299 TTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTG 29358 || || ||||| ||||| |||||||| || || || ||||| ||||| ||||| | ||| Sbjct 1 TTCGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCTGATTG 60 Query 29359 ATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGG 29418 |||||| |||||||| |||| ||||| |||||| |||| |||||| | ||||| ||| Sbjct 61 ATCTTCTAATATGCTAGTTTCTATAATTCTCGTTCTTTACATTTCTTCATAGCTGCTTGG 120 Query 29419 CCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAAC 29478 | || ||||| || |||||| ||| || || | || ||| | || || || || Sbjct 121 CTTGTAGTAGGTATCTGGTTCATTGCTTTAGGTATCGGCACTATGACTTTCAACCTAAAT 180 Query 29479 GGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCT 29538 ||||| || |||||||| || | | || | | | |||||||| ||||||||||||||| Sbjct 181 GGTTTCAATTTTAACCAATCTATAGTTGATAGCCAAGGTCGTGTAATTAATACTTGGGCT 240 Query 29539 GATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATA 29596 ||| || |||| || |||||||| || | ||||| |||||||| |||||||||||| Sbjct 241 GATTTTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCATA 298 >seq212858 Length=258 Score = 111 bits (122), Expect = 5e-20 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 29482 TTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGAT 29541 || || || ||||| || | | || | | | |||||||| |||||||||||| ||||| Sbjct 258 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGTGTAATTAATACTTGGACTGAT 199 Query 29542 GTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTC 29601 || |||| || |||||||| || | |||| |||||||| |||||||||||||| ||| Sbjct 198 ATTATCAACCGTGCTAACCTTGGTATGAAAGTTATGCATGAACGTAATGCTCATAATTTC 139 Query 29602 CCACTTGATCTGGCTA 29617 || || ||||| |||| Sbjct 138 CCTCTAGATCTAGCTA 123 >seq161073 Length=246 Score = 91.5 bits (100), Expect = 4e-14 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 28889 TTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTG 28948 ||||||||||| | ||||| || || || | | || | || | |||| | | ||| Sbjct 4 TTGATGAATGGTTATACAATGGTGGCCCTTATGAGCTAATTGTTCTACACTACTTACTTG 63 Query 28949 GCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGT 29008 | || | ||||||||| || |||| ||||||||| | | ||||| ||| | | Sbjct 64 GTGTAGCTTTTTACATGGGTCGTGAGTAGGAACTTAGTTTCCATCTAGGTATGCACCATT 123 Query 29009 GGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACC 29068 ||||| ||| ||||| | |||||| | ||||| | |||| |||||| | |||||| Sbjct 124 GGATTGTTGTTGCATATTTAGCTCCTATTGCAGCTACTACTGCTGTTTTCTTGATCTACC 183 Query 29069 CATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACT 29128 || | ||| |||| ||| || | |||||| | || || || || || ||||||| Sbjct 184 CAATTGGTTAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACT 243 Query 29129 ACA 29131 || Sbjct 244 TCA 246 >seq493281 Length=200 Score = 82.4 bits (90), Expect = 2e-11 Identities = 140/201 (70%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 28777 GAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCG 28836 |||||||| ||||| ||| || ||||||||||| || || || || ||| || | || Sbjct 199 GAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATCATTCCT 140 Query 28837 AG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATG 28894 | | ||| || || || | ||||| |||||||| | |||||| | || |||||| Sbjct 139 ACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATATAGGAAGCAACATCCGTTGATG 82 Query 28895 AATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCT 28954 ||||| | ||||| || || || | | || | || | |||||| | |||| || Sbjct 81 AATGGTTATACAATGGTGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAG 22 Query 28955 ATGCTTACATGGGACGCGAGT 28975 | ||||||||| || |||| Sbjct 21 CTTGTTACATGGGTCGTGAGT 1 >seq666543 Length=3475 Score = 80.6 bits (88), Expect = 8e-11 Identities = 152/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 28858 CACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCG 28917 || || || ||||| |||||||| || ||||||||| | | ||||| | || || Sbjct 2113 CATTTTTATCCAATATGGGAAGCCGCATCTGTTGATGAATAGTTATACAATGATGGTCCT 2172 Query 28918 TTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGG 28977 | | || | ||| | |||||| | || | || | ||||||||| || |||||| Sbjct 2173 TATAAGCTAATTGTCCTACACTTCTTATTTAGTGTAGCTTGTTACATGGGTCGTGAGTGG 2232 Query 28978 GAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTC 29037 |||||||| | | | || ||| | | | |||| ||| |||| |||||| | || Sbjct 2233 GAACTTAGTTTCCATTTGGGTATGCGCCTTTAGATTGTTGTTACATATTCAGCTTCTGTT 2292 Query 29038 GCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGG 29081 |||| | ||| |||||| | |||||||| | |||||||| Sbjct 2293 ACAGCTACTACTGTTGTTTTCTTGATCTACCCAATTGGTCAAGG 2336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145348691869250