Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq681135 215 7e-50 seq704910 86.0 9e-11 >seq681135 Length=1827 Score = 215 bits (238), Expect = 7e-50 Identities = 366/523 (70%), Gaps = 12/523 (2%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCA-GCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTT 1455811 ||||||| || | |||| || | | |||||||||||| || ||||||||||| || || Sbjct 1142 TGTTCCCGATTCAGTACCCTGCAG-TCTGGGAAATGTAC-AAGAAGGCCGAGGCGTCGTT 1085 Query 1455812 TTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGA 1455871 ||||||||||||||| ||||||||| ||| | || |||| || | | Sbjct 1084 TTGGACCGCCGAGGAAGTCGACCTCTCTCAGGACCAGCGTCAATGGGAAAACCTCACCAG 1025 Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 ||||||| || ||||||| || |||| ||||| || |||||| || || |||| Sbjct 1024 CGACGAGAAGCACTTCATCAGTCATATCCTTGCCTTCTT-CGCCGCTTCTGACGGAATCG 966 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGT 1455991 | ||| || || ||||| | || ||||| |||||||| | | ||||| ||| | Sbjct 965 TCCTCGAAAATCTCGCCGGAAGGTTCATGAAGGAGGTCCAGGTCTCCGAGGCTCGTGCCT 906 Query 1455992 TTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCG 1456051 | || || || ||||| ||||| ||||||||||||||||| | ||| || || | | Sbjct 905 TCTATGGATTTCAGATTGCCATTGAAAACATCCACTCTGAGATGTACAGTCTGTTGTTAG 846 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 | | || ||||||| || ||||| || ||||||| ||| ||||| || | | Sbjct 845 AATCGTATATCAAGGATCCAAAGGAGAAAAACAGGCTCTTTCACGCAATCGATACCATCC 786 Query 1456112 CGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA 1456171 | | ||| ||| || ||| | ||||| | |||||| || ||| ||| | Sbjct 785 CCTGTGTGGCGAAGAAAGCCCAGTGGGCTCTCCGATGGATC------GACGGCTCCGAAA 732 Query 1456172 -CTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTT 1456229 ||||||||| || || ||| || ||| |||| || |||||||| ||||| || || | Sbjct 731 CCTTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCT 672 Query 1456230 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 ||||| | || || ||||| ||||| ||||| |||||||| || Sbjct 671 TCTGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGG 629 >seq704910 Length=1084 Score = 86.0 bits (94), Expect = 9e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||||| |||| ||||| |||||||||| || |||||||||| |||| | | Sbjct 1 CTCCAGCAAGGCCATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAACTTGC 60 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 | ||||| || |||||||||| ||||||| |||||| | || ||||| Sbjct 61 CCAGGAGGCATCGCGGCTGGCGCGCTACAACAAGAAGCCGACGATCACTTCTCGGGAGAT 120 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 ||||||||| || || || | | | |||||| |||||| |||||| || || ||||| Sbjct 121 CCAGACCGCAGTACGATTGGTACTTCCCGGCGAGTTGGCCAAGCACGCTGTTTCGGAGGG 180 Query 725138 CACCA 725142 |||| Sbjct 181 AACCA 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7104881553992250