Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq516297 251 1e-61 seq551508 248 1e-60 seq545415 178 2e-39 seq345357 134 2e-26 seq589273 114 2e-20 seq493281 107 3e-18 seq717558 104 3e-17 seq655765 93.3 6e-14 >seq516297 Length=515 Score = 251 bits (278), Expect = 1e-61 Identities = 360/506 (71%), Gaps = 1/506 (0%) Strand=Plus/Minus Query 174933 ATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAAC 174992 ||||| | || |||||||| || ||||||| |||| | || ||| | || || || ||| Sbjct 506 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCACAAC 447 Query 174993 ATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTC 175052 ||| | |||||| | ||||||||||||| | | | ||||| || |||||||| | ||| Sbjct 446 ATCCTTATGCACTCATTCCACATGTTGGCA-TAGTTGGTGTATTTGGTGGTTCCCTATTC 388 Query 175053 TCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAG 175112 | |||||||||||| | || |||||| | | | || || | |||| ||| Sbjct 387 AGTGTTATGCATGGTTCATTGGTAACCTCTAGTTTGATTAGGGAAACCATAGAAAATGAA 328 Query 175113 TCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCC 175172 || ||| ||||||| |||| ||||| ||||| || ||||| || ||| || Sbjct 327 TCTGCGAATGTAGGTTACACATTCGATCAAGATGAAGAAACTTATAATATTACGGCTGCT 268 Query 175173 CATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTC 175232 ||||| || | ||||| ||||| |||||||| ||| |||||| || || || || | Sbjct 267 CATGGTTATTCTGGTCGATTGATTTTCCAATATGCTATATTCAATAATTCTCGTTCTTTA 208 Query 175233 CACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCC 175292 || |||||| ||| || ||||| | || ||||||||||||| || | ||| | | Sbjct 207 CATTTCTTCCTAGTTGCTTGGCCTATAGTAGGTATCTGGTTCATTGCTTTAGGTATCAAC 148 Query 175293 ACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGT 175352 || || | ||| |||| ||||||||||| |||||||| ||| | | || | |||||| Sbjct 147 ACTCTGACTTTCTACCTAAATGGTTTCAATTTCAACCAATCTATAGTTGATAGTCAAGGT 88 Query 175353 AGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATG 175412 | ||| | || || | ||| ||| || | || | ||| ||||| |||||||| ||| Sbjct 87 TGTGTAATTAATACTTAGGCTGATATTATAAATCGTGCTAACCTTGGTATGGAAGTTATG 28 Query 175413 CATGAGAGAAATGCACACAACTTCCC 175438 ||||| | ||||| || || ||||| Sbjct 27 CATGAACGTAATGCTCATAATTTCCC 2 >seq551508 Length=510 Score = 248 bits (274), Expect = 1e-60 Identities = 346/485 (71%), Gaps = 0/485 (0%) Strand=Plus/Plus Query 174795 TATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTA 174854 || ||||| |||||||||||||| || ||| | | |||| | |||||||| ||| Sbjct 18 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGCTATGCGCCCTTGGATTGTTGTT 77 Query 174855 GCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAA 174914 ||||| || || || |||||||| ||| | || | ||| | |||| || | |||||| Sbjct 78 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAA 137 Query 174915 GGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTC 174974 || || | || | ||||| | | |||||||| || ||||||| |||| | || Sbjct 138 GGAAGCTTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTCATGATTGTA 197 Query 174975 TTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTC 175034 ||||| | || || |||||| | |||||||| ||||||||||| | || || ||||| Sbjct 198 TTCCAGGTTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGATGTAGCTGGTGTA 257 Query 175035 TTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGT 175094 ||||| ||||| | ||| ||| ||||||||||| | || |||||| | | | Sbjct 258 TTCGGCGGTTCCCTATTCAGAGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATAAGG 317 Query 175095 GAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACC 175154 || || || ||| ||| || || |||||||| ||||| ||||| ||||| || Sbjct 318 GAAACCACAAAAAATGAATCTGCTAATGCAGGTTACAAATTCGGTCAAGAGGAAGAAACT 377 Query 175155 TATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 175214 ||||| || ||||| || | || || || || || ||||| |||||||| ||| ||| Sbjct 378 TATAATATTGTGGCTGCTCCAGGTTATTTTGGCCGATTGATATTCCAATATGCTAGTTTC 437 Query 175215 AACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTC 175274 || || ||| | || | | |||||| |||| || ||||| || || |||||||||||| Sbjct 438 AATAATTCATGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC 497 Query 175275 ACCGC 175279 || || Sbjct 498 ACTGC 502 >seq545415 Length=298 Score = 178 bits (196), Expect = 2e-39 Identities = 217/296 (73%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 175134 TTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTG 175193 ||||| ||||| ||||| || ||||| || ||||| || ||||| || || || | ||| Sbjct 1 TTCGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCTGATTG 60 Query 175194 ATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGG 175253 |||||| |||| ||| ||| | || || || || | || |||||| |||| || ||| Sbjct 61 ATCTTCTAATATGCTAGTTTCTATAATTCTCGTTCTTTACATTTCTTCATAGCTGCTTGG 120 Query 175254 CCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAAT 175313 | || || ||||||||||||| || | ||| | ||| ||| | |||||||| ||| Sbjct 121 CTTGTAGTAGGTATCTGGTTCATTGCTTTAGGTATCGGCACTATGACTTTCAACCTAAAT 180 Query 175314 GGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCG 175373 |||||||| || ||||| ||| | | || | |||||| | ||| | || || ||||| Sbjct 181 GGTTTCAATTTTAACCAATCTATAGTTGATAGCCAAGGTCGTGTAATTAATACTTGGGCT 240 Query 175374 GATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACA 175429 ||| || | ||| | ||| ||||| |||||||| |||||||| | ||||| || Sbjct 241 GATTTTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCA 296 >seq345357 Length=322 Score = 134 bits (148), Expect = 2e-26 Identities = 190/266 (71%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 176223 CGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTT 176282 || || || || || || ||||| | ||| || | ||| ||||| | ||| || Sbjct 291 CGACCTTATAATGCAATCGCATTATCTATTCCAATTGTTGTTTTTGTT--TCTGTACCTA 234 Query 176283 CTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATC 176342 | || ||||||||||| ||| |||||||||| || |||||| | ||| | || Sbjct 233 ATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGTGCCTAGTTTTGGTATAGCATCTATA 174 Query 176343 TTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATG 176402 ||| ||||| | | ||| | || || || || || |||||| ||||||| || |||||| Sbjct 173 TTTTGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATG 114 Query 176403 ATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTT 176462 |||||||||| ||| || | || | || || |||| || || ||||| | ||| ||| Sbjct 113 ATGGGAGTTGTCGGTGTATTGGGCGTTGCTCTGCTATGCGCTATTCATGGTGCTACCGTT 54 Query 176463 GAAAATACCCTATATGAAGATGGAGA 176488 |||||||| ||| ||||||||| || Sbjct 53 GAAAATACTTTATTTGAAGATGGTGA 28 >seq589273 Length=208 Score = 114 bits (126), Expect = 2e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 176547 GTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGG 176606 || || || ||| |||| ||||| |||||||| |||||||| ||| ||||| ||||| Sbjct 1 GTCACCGCTAACTGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGG 60 Query 176607 CTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATC 176666 | || ||||||||||| ||||| || || | | | | ||| | | |||| | Sbjct 61 TTACATTTCTTTATGTTATTTGTACCAGTAACCGATTTATGGATGAGTGCTTTTGGAGTA 120 Query 176667 ATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCA 176726 | || || ||| | || | ||||| ||||| ||||| ||| || || | ||||| Sbjct 121 GTCGGTCTGGCTTTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCG 180 Query 176727 GAAGATCCTGAGTTTGAAACTTTCTACA 176754 ||||||||||| ||||| |||||||||| Sbjct 181 GAAGATCCTGAATTTGAGACTTTCTACA 208 >seq493281 Length=200 Score = 107 bits (118), Expect = 3e-18 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 174611 TGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCC 174670 |||||| || |||| || || | ||||||||||| || ||||||||||| | |||| Sbjct 200 TGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATCATTCC 141 Query 174671 TAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGA 174730 || ||| || || ||| | ||||| |||||||| | ||||||| | | | || || Sbjct 140 TACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATAGGAAGCAACATCCGTTGATGA 81 Query 174731 ATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTNNNNN 174790 |||| | ||||| |||||||||| | ||| |||| | |||||| | ||||| Sbjct 80 ATGGTTATACAATGGTGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGC 21 Query 174791 NNNNTATATGGGACGTGAGT 174810 || ||||| ||||||| Sbjct 20 TTGTTACATGGGTCGTGAGT 1 >seq717558 Length=1667 Score = 104 bits (114), Expect = 3e-17 Identities = 248/372 (67%), Gaps = 6/372 (2%) Strand=Plus/Plus Query 174954 ACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCAC 175013 || || |||| |||| | || ||| ||||| || |||||| | |||||| | |||||| Sbjct 1060 ACTTTTAACTTCATGATTGTATTCTAAGCAAAATGCAACATCCTTATGCACTCATTCCAC 1119 Query 175014 ATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTT 175073 ||||| | || ||| | ||||| ||||| || | ||||||||||| | Sbjct 1120 ATGTTCGTTGTACTTGGTATATTCGGAGGTTCCCCATTTAATGTTATGCATGGTTCTTTG 1179 Query 175074 GTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAG 175133 || |||| || ||| | | || || ||| ||| | | || | ||||| | Sbjct 1180 GTAACCT-TTAGTTTGATAGGGTAACCACAAAAAATGAATATCCTAATGAAGGTTAAATA 1238 Query 175134 TTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTG 175193 || || ||||| ||||| || |||| || |||| | |||| || || || || ||| Sbjct 1239 TTTGGTCAAGAGGAAGAAACTTATACTATTGTGGTTGATTATGGTTATTTTGGCCGATTG 1298 Query 175194 ATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTCTTC----TTAGCCGC 175249 | | |||||| ||| ||||| || |||| | | || |||||| |||| | Sbjct 1299 GT-TACCAATATGCTAGTTTCAATAATTCACATTTTTTACATTTCTTCCCAGCTAGCTAC 1357 Query 175250 ATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCT 175309 ||| | || || ||||||| |||||| | | || | ||| ||||| |||||||| Sbjct 1358 TTGGACTGTAGTAGGTATCTAGTTCACTACTTTAGGCATCAGCACTATGGCTTTCAACCT 1417 Query 175310 CAATGGTTTCAA 175321 ||||||||||| Sbjct 1418 AAATGGTTTCAA 1429 >seq655765 Length=3443 Score = 93.3 bits (102), Expect = 6e-14 Identities = 211/315 (67%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 176535 ACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGT 176594 || ||||| ||||| | ||| ||||| || | ||| |||||||| ||||| ||| Sbjct 2208 ACTTATTCAATGGTCATTGCTAACCGTTTTTCGTCCCAAATCTTTAAGGTTGTTTTTTCC 2149 Query 176595 AATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCA 176654 ||||| ||| | || |||||| |||| ||||| || || | | | ||| | Sbjct 2148 AATAAATGTTTTTTACATTTCTTTGTGTTATTTGTACCAGTAACCAATTTATGGATGAGT 2089 Query 176655 AGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAG 176714 | |||| | | || || ||||| || | |||| ||| | || || |||||| Sbjct 2088 GCTCTTGGAGTAGTCGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAA 2029 Query 176715 ATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAAC 176774 || | || ||||||||||| ||||| | ||||||||| || || || || || ||| Sbjct 2028 ATCCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCCTAAAC 1969 Query 176775 GAAGG-ACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCC 176833 ||||| | | | | | |||||| || | ||||| || |||| || ||||| | Sbjct 1968 GAAGGTATTCATA-CTTGGATGACAATTCAAGATCAGCCTTATGAAAACCTTATATTCTC 1910 Query 176834 AGAAGAAGTTCTACC 176848 || || |||||||| Sbjct 1909 TGAGGAGGTTCTACC 1895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723030624765000