Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq551508 311 1e-79 seq516297 268 1e-66 seq717558 158 1e-33 seq345357 125 9e-24 seq455454 107 2e-18 seq161073 105 8e-18 seq655765 98.7 1e-15 seq666543 93.3 5e-14 seq493281 91.5 2e-13 seq612489 89.7 6e-13 seq711014 87.8 2e-12 >seq551508 Length=510 Score = 311 bits (344), Expect = 1e-79 Identities = 360/485 (74%), Gaps = 0/485 (0%) Strand=Plus/Plus Query 178176 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 178235 |||||||| ||||||||||||||| | |||| | | ||||||||| ||||| ||| Sbjct 18 TACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGCTATGCGCCCTTGGATTGTTGTT 77 Query 178236 GCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAA 178295 ||||| || ||||| || ||||| || | || | ||| || |||| || | |||||| Sbjct 78 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAA 137 Query 178296 GGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 178355 || |||| ||| | ||||| || | ||||||||||| ||||||| |||| |||| Sbjct 138 GGAAGCTTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTCATGATTGTA 197 Query 178356 TTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTA 178415 ||||| | || |||||||| || |||||||| ||||||||||| | ||| || |||||| Sbjct 198 TTCCAGGTTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGATGTAGCTGGTGTA 257 Query 178416 TTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGT 178475 ||||| ||||| || ||||| || ||||| ||||| ||||| || ||| | | | Sbjct 258 TTCGGCGGTTCCCTATTCAGAGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATAAGG 317 Query 178476 GAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACA 178535 ||||| || ||| ||||| || ||||| || ||||| ||||| ||||| || Sbjct 318 GAAACCACAAAAAATGAATCTGCTAATGCAGGTTACAAATTCGGTCAAGAGGAAGAAACT 377 Query 178536 TACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTC 178595 || || || || || || | || || || || || ||||| |||||||||||| ||| Sbjct 378 TATAATATTGTGGCTGCTCCAGGTTATTTTGGCCGATTGATATTCCAATATGCTAGTTTC 437 Query 178596 AACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTC 178655 || || ||| |||| | | |||||||| || || ||||||||||| || ||||||||| Sbjct 438 AATAATTCATGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC 497 Query 178656 ACCGC 178660 || || Sbjct 498 ACTGC 502 >seq516297 Length=515 Score = 268 bits (296), Expect = 1e-66 Identities = 369/515 (72%), Gaps = 1/515 (0%) Strand=Plus/Minus Query 178305 TCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCA 178364 ||||| | ||||| || || ||||||||||| ||||||| |||| |||| ||| | || Sbjct 515 TCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCTAGGCT 456 Query 178365 GAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGT 178424 || |||||||| || |||||| | ||||||||||||| | | |||||||| |||||| Sbjct 455 GAGCACAACATCCTTATGCACTCATTCCACATGTTGGCA-TAGTTGGTGTATTTGGTGGT 397 Query 178425 TCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACT 178484 || || ||||||| ||||| ||||| ||||| || ||| | || | ||||| | Sbjct 396 TCCCTATTCAGTGTTATGCATGGTTCATTGGTAACCTCTAGTTTGATTAGGGAAACCATA 337 Query 178485 GAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATC 178544 |||| ||||| ||| ||||| | |||| ||||| ||||| || || || || Sbjct 336 GAAAATGAATCTGCGAATGTAGGTTACACATTCGATCAAGATGAAGAAACTTATAATATT 277 Query 178545 GTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCA 178604 || || ||||| || | ||||| ||||| |||||||||||| |||||| || || Sbjct 276 ACGGCTGCTCATGGTTATTCTGGTCGATTGATTTTCCAATATGCTATATTCAATAATTCT 217 Query 178605 CGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTG 178664 ||||| | || |||||||| | || |||||| |||| || |||||||||| || | Sbjct 216 CGTTCTTTACATTTCTTCCTAGTTGCTTGGCCTATAGTAGGTATCTGGTTCATTGCTTTA 157 Query 178665 GGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGAC 178724 || | | ||| || | || |||| ||||| ||||| |||||||| || || | || Sbjct 156 GGTATCAACACTCTGACTTTCTACCTAAATGGTTTCAATTTCAACCAATCTATAGTTGAT 97 Query 178725 GGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATG 178784 | ||||| |||| | || || | ||| || | | || ||||| || || ||| Sbjct 96 AGTCAAGGTTGTGTAATTAATACTTAGGCTGATATTATAAATCGTGCTAACCTTGGTATG 37 Query 178785 GAAGTCATGCACGAGCGCAACGCGCACAACTTCCC 178819 ||||| ||||| || || || || || || ||||| Sbjct 36 GAAGTTATGCATGAACGTAATGCTCATAATTTCCC 2 >seq717558 Length=1667 Score = 158 bits (174), Expect = 1e-33 Identities = 356/531 (67%), Gaps = 7/531 (1%) Strand=Plus/Plus Query 178176 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 178235 |||||||| ||||||||| | ||| | || | ||||||||||||| | || | ||| Sbjct 902 TACATGGGTCGTGAGTGGAAGCTTAGTTTCCATCTAGGTATGCGCCCTTAGAACGTTGTT 961 Query 178236 GCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAA 178295 |||| ||| || || || | | | | | ||| | ||| || | ||| || Sbjct 962 ACATATTCTT-TCTTGTTACATCTACTACTGTTATTTTCTTAATCTGCCCAATTGGTTAA 1020 Query 178296 GGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTT 178355 | |||| | | | |||| || | || || || || |||| |||| |||| Sbjct 1021 AGAAATTTTTTTAATGGTTTGCCTCTAGTAATTAGTGCCACTTTTAACTTCATGATTGTA 1080 Query 178356 TTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTA 178415 ||| ||||| || |||||| || |||||| | ||||||||||| | ||| ||| || Sbjct 1081 TTCTAAGCAAAATGCAACATCCTTATGCACTCATTCCACATGTTCGTTGTACTTGGTATA 1140 Query 178416 TTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGT 178475 ||||| ||||| | || | || ||||| ||||||||||| || | || | | | | Sbjct 1141 TTCGGAGGTTCCCCATTTAATGTTATGCATGGTTCTTTGGTAACCT-TTAGTTTGATAGG 1199 Query 178476 GAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACA 178535 | ||| || ||| |||| | || | ||||| | || || ||||| ||||| || Sbjct 1200 GTAACCACAAAAAATGAATATCCTAATGAAGGTTAAATATTTGGTCAAGAGGAAGAAACT 1259 Query 178536 TACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTC 178595 || | || || | | |||| || || || || ||| | | |||||||||| ||| Sbjct 1260 TATACTATTGTGGTTGATTATGGTTATTTTGGCCGATTGGT-TACCAATATGCTAGTTTC 1318 Query 178596 AACAACTCACGTTCACTGCACTTCTTC----CTCGCAGCATGGCCTGTAGTTGGAATCTG 178651 || || |||| || | || |||||| || || | ||| ||||||| || |||| Sbjct 1319 AATAATTCACATTTTTTACATTTCTTCCCAGCTAGCTACTTGGACTGTAGTAGGTATCTA 1378 Query 178652 GTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAA 178702 |||||| | | ||| | ||||| ||||| || ||||| ||||| ||||| Sbjct 1379 GTTCACTACTTTAGGCATCAGCACTATGGCTTTCAACCTAAATGGTTTCAA 1429 >seq345357 Length=322 Score = 125 bits (138), Expect = 9e-24 Identities = 217/312 (70%), Gaps = 4/312 (1%) Strand=Plus/Minus Query 179565 CAATTTGAACTTGCTCGC-CTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGG 179623 ||||| ||||||||||| ||| | | | ||||||| ||||| || || || ||| Sbjct 321 CAATTCGAACTTGCTCGATCTGTTCAATTGC-GACCTTATAATGCAATCGCATTATCTAT 263 Query 179624 TCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTT 179683 ||| |||| ||| || || ||| ||| || ||||| | || ||||| |||||| Sbjct 262 TCCAATTGTTGTTTTTGTTTCTGTA--CCTAATTTATCCACTAGGTCAGTCTGGTTGGTT 205 Query 179684 TTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTT 179743 || | ||| |||||| | || | || || | ||| | || || | || || || Sbjct 204 CTTTGTGCCTAGTTTTGGTATAGCATCTATATTTTGATTCATCCTCTTTTTCCAAGGGTT 145 Query 179744 CCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGC 179803 || || ||||| | ||||| || |||||||||||||||| ||| || | || | || Sbjct 144 TCATAATTGGACATTGAACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCGTTGC 85 Query 179804 ACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACA 179863 ||||| | ||||| ||||| | ||| || || ||||| || | ||||||||| || Sbjct 84 TCTGCTATGCGCTATTCATGGTGCTACCGTTGAAAATACTTTATTTGAAGATGGTGATGG 25 Query 179864 AGCAAATACCTT 179875 |||||||| || Sbjct 24 TGCAAATACATT 13 >seq455454 Length=251 Score = 107 bits (118), Expect = 2e-18 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 178351 TTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAG 178410 |||| ||||| || || |||||||| || |||||||| ||||||||||| || | | | Sbjct 2 TTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCTTAGTTG 61 Query 178411 GTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCG 178470 ||||||||| ||||| || ||||||| ||||||||||| ||||| || | || ||| Sbjct 62 GTGTATTCGACGGTTCCCTATTCAGTGTTATGCACGGTTCCTTGGTAAC-TTGTCTTTCG 120 Query 178471 TTCGTGAAACGACTGAAA 178488 | ||| ||| |||| ||| Sbjct 121 TACGTCAAA-GACTAAAA 137 >seq161073 Length=246 Score = 105 bits (116), Expect = 8e-18 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 178105 TTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTG 178164 ||||||| ||| | || || ||||| |||| | || | || | |||| | | ||| Sbjct 4 TTGATGAATGGTTATACAATGGTGGCCCTTATGAGCTAATTGTTCTACACTACTTACTTG 63 Query 178165 GTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCT 178224 || | | |||||||| ||||||| ||||||| | || | ||||||||| || | Sbjct 64 GTGTAGCTTTTTACATGGGTCGTGAGTAGGAACTTAGTTTCCATCTAGGTATGCACCATT 123 Query 178225 GGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATC 178284 |||| ||| ||||| | ||||| | ||||| | | || || ||| || |||| | Sbjct 124 GGATTGTTGTTGCATATTTAGCTCCTATTGCAGCTACTACTGCTGTTTTCTTGATCTACC 183 Query 178285 CTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACT 178344 | | ||| |||| |||||||| | ||||| || || ||||||||||| ||||||| Sbjct 184 CAATTGGTTAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACT 243 Query 178345 ACA 178347 || Sbjct 244 TCA 246 >seq655765 Length=3443 Score = 98.7 bits (108), Expect = 1e-15 Identities = 206/305 (68%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 179849 TGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGAC--ACAGGAAGAAGAG 179906 ||||||||| || |||||||| ||| ||| ||| || | | | | ||||| | Sbjct 2266 TGAAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCATCTTAAACTAAGAAAA- 2208 Query 179907 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCT 179966 ||||||| ||||||| ||| ||||| || | ||| || ||||| ||| ||||| Sbjct 2207 -CTTATTCAATGGTCATTGCTAACCGTTTTTCGTCCCAAATCTTTAAGGTTGTTTTTTCC 2149 Query 179967 AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCC 180026 || || | | | ||||| || |||| ||||| || || | | |||||| Sbjct 2148 AATAAATGTTTTTTACATTTCTTTGTGTTATTTGTACCAGTAACCAATTTATGGATGAGT 2089 Query 180027 TCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAG 180086 || |||| | | ||||| ||||| ||| | |||| || | ||||| || || Sbjct 2088 GCTCTTGGAGTAGTCGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAA 2029 Query 180087 ATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAAT 180146 ||| | || |||||||| || ||||||| ||||||||||| || ||||| || || Sbjct 2028 ATCCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCCTAAAC 1969 Query 180147 GAAGG 180151 ||||| Sbjct 1968 GAAGG 1964 >seq666543 Length=3475 Score = 93.3 bits (102), Expect = 5e-14 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 178074 CACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCT 178133 || || ||||| || |||||||||||||| ||||||| | | | || || | ||||||| Sbjct 2113 CATTTTTATCCAATATGGGAAGCCGCATCTGTTGATGAATAGTTATACAATGATGGTCCT 2172 Query 178134 TTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGG 178193 | | || | || | |||||| | || || | | |||||||| ||||||||| Sbjct 2173 TATAAGCTAATTGTCCTACACTTCTTATTTAGTGTAGCTTGTTACATGGGTCGTGAGTGG 2232 Query 178194 GAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTA 178253 |||||| | || ||| |||||||||| | ||| ||| |||| || ||| | || Sbjct 2233 GAACTTAGTTTCCATTTGGGTATGCGCCTTTAGATTGTTGTTACATATTCAGCTTCTGTT 2292 Query 178254 GCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGG 178297 |||| | | | || ||| || |||| || | |||||||| Sbjct 2293 ACAGCTACTACTGTTGTTTTCTTGATCTACCCAATTGGTCAAGG 2336 >seq493281 Length=200 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177992 TGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCC 178051 |||||| || |||| || || | ||||| ||||| || ||||||||||| | |||| Sbjct 200 TGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATCATTCC 141 Query 178052 ATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGA 178111 |||| || || ||| | ||||| || || || | |||||| |||| ||||||| Sbjct 140 TACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATAGGAAGCAACATCCGTTGATGA 81 Query 178112 GTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTA 178171 ||| | || || |||||||||| | || | || | |||||| | ||||| | Sbjct 80 ATGGTTATACAATGGTGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGC 21 Query 178172 TGCATACATGGGACGTGAGT 178191 | |||||||| ||||||| Sbjct 20 TTGTTACATGGGTCGTGAGT 1 >seq612489 Length=2436 Score = 89.7 bits (98), Expect = 6e-13 Identities = 169/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 179910 TATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAAC 179969 ||||| |||||||| | |||| ||||| ||| || ||||| || |||| |||||||| Sbjct 503 TATTCAATGGTCACCACTAACCACTTCTAGTCTCAAATCTTTAGTGTTGCTTTTTCTAAT 444 Query 179970 AAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGA--CATCCT 180027 || | | |||| ||| | || ||| | | | | |||||||||| ||| || Sbjct 443 AAACATTTTACACATTCTTT-AGATTATTTATACAAGAAACTGGTCTATGGATGCATACT 385 Query 180028 CTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGA 180087 || | | || | || | ||| | ||| | | |||||| | ||||| ||||| | Sbjct 384 CTTGTAG--TTTTCAGTATAGCTTTGAACTTACATGCTTATAACTTCGTTTCCCAGGAAA 327 Query 180088 TCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATG 180147 ||| | || | |||||| | | |||||||| ||||||||||| || | | ||| |||| Sbjct 326 CCAGTGTAGAAAAAGATCTCAAATTTGAGACTTTCTACACCAAAAATA-TGATCTTAATG 268 Query 180148 AAGG 180151 |||| Sbjct 267 AAGG 264 >seq711014 Length=229 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 178320 CTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTG 178379 || || ||||||||||| ||||||| ||| |||| ||||| || || |||||||| || Sbjct 146 CTAGGAATCTCTGGTACCTTCAACTTCATTATTGTATTCCAGGCTGAGCACAACATCCTT 205 Query 178380 ATGCACCCCTTCCACATGTTGGG 178402 |||||||| ||||||||||| || Sbjct 206 ATGCACCCATTCCACATGTTAGG 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 600281862390000