Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq681135 152 7e-32 seq5092 141 1e-28 >seq681135 Length=1827 Score = 152 bits (168), Expect = 7e-32 Identities = 392/588 (67%), Gaps = 18/588 (3%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| ||||| || || |||| |||||| |||| ||||| || || || || || Sbjct 566 AAGCACGCGAAATCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTT 625 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAA 39732 | ||| ||||| ||||| || || || ||||| ||||| | |||| ||| | || || || Sbjct 626 AATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCG-AGCAGAAGCTTCCGGAGAA 684 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT--GTATCATTA 39790 |||||||||||| || || ||||| | || | || | | || | | | Sbjct 685 GAAGATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGC--CG 742 Query 39791 TGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 39850 | ||||| | ||||| | ||||||||| ||||| || || || || || || Sbjct 743 TCGATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTGCG 802 Query 39851 TTAAAGAGATAATGTTTTTCATCACT--ATCTTTAACATATGTATCTATTAACAGACTAT 39908 | |||||| |||||||| | | ||| || | ||| | |||| |||||||| | Sbjct 803 TGAAAGAG--CCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGT 860 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 |||| || || |||||||||||||| || ||||||||||| || || | || || | Sbjct 861 ACATCTCAGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGG 920 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | || ||||| || ||| | || | |||||| || ||||| ||| || Sbjct 921 AGACCTGGACCTCCTTCATGAACCTTCCGGCGAGATTTTCGAGGACGATTCCGTCAGAAG 980 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 |||| || || || | | ||| | || || | || || ||| || | || |||| Sbjct 981 CGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTGAGGTT-TTCC 1039 Query 40089 AGTCATTGA----TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 |||||| || | || | || ||||| || || ||||||||||||||||| Sbjct 1040 ---CATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCCTCG 1096 Query 40145 GCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192 ||||| |||||||| | ||| | || | || || || || || ||| Sbjct 1097 GCCTTCTTGTACATTTCCCAGACTGCAGGGTACTGAATCGGGAACATA 1144 >seq5092 Length=1596 Score = 141 bits (156), Expect = 1e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | |||||||| ||| | || | ||||| |||| ||| || Sbjct 1264 TCCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTAGCATAGGAACAATGCC 1205 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||||||| ||||||||||||| | || ||||| ||| || ||| Sbjct 1204 ATTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCACGAATGTTATGAACAGA 1145 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || || ||| | |||||| || | ||||||||||| Sbjct 1144 AACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTTAGAGTGTCATATAT 1085 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || || ||||||||| ||||| || ||| || |||||| Sbjct 1084 TCCTTCAATACTATCATCTTTCATGCAAATAAGGAAGCAGCTA 1042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 680416438545000