Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq681135 132 4e-26 seq527232 87.8 1e-12 >seq681135 Length=1827 Score = 132 bits (146), Expect = 4e-26 Identities = 239/344 (69%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || ||||| ||||| |||||||| ||||| || || || || ||||||||||| || || Sbjct 906 TTCTATGGATTTCAGATTGCCATTGAAAACATCCACTCTGAGATGTACAGTCTGTTGTTA 847 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || |||| ||||| ||| | ||||| | | | ||| | || || || || | Sbjct 846 GAATCGTATATCAAGGATCCAAAGGAGAAAAACAGGCTCTTTCACGCAATCGATACCATC 787 Query 44063 CC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 || || | | | ||||| | ||||| || |||||| | || | || Sbjct 786 CCCTGTGTGGCGA-AGAAAGCCCAGTGGGCTCTCCGATGGATCGACGGCTCCGAAACCTT 728 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT-TG 44180 || ||||| || |||| || || ||||||||||| ||||| || ||| || || Sbjct 727 TGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTG 668 Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240 | | ||||| ||| |||||||||| ||| | ||||| || || || || |||||||||| Sbjct 667 CT-CGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATGAGT 609 Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 |||| || || || |||||||| |||||||| || |||||| Sbjct 608 TAATCTCGCGAGACGAGGGCTTACACTGCGATTTCGCGTGCTTG 565 >seq527232 Length=272 Score = 87.8 bits (96), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||| |||||| | || || |||| |||||||| | ||||| || ||||||||| | Sbjct 162 GCCATTTTTTGGCTTAAAAAGAGAGGATTGATGCCATGTTTGACTTTCTCAAATGAGCTT 103 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 || | | ||||||||| | |||||||||||||||||||| Sbjct 102 ATTTCTAGAGATGAAGGCCTTCATTGCGATTTTGCTTGCTT 62 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393793334280625