Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq109077 105 6e-18 seq736048 102 7e-17 seq726932 95.1 1e-14 seq620935 95.1 1e-14 >seq109077 Length=726 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || ||||| ||||| ||||| || || ||| || ||||||| Sbjct 440 ACCAAGTGAAGTGTTGACTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGC-CGTCTTC 498 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || || ||| |||| || | ||| || ||||| || | ||||| ||||| Sbjct 499 CAGCTGCTTCCCTGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCCTG 558 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| ||||| | | || | ||||| | | ||| || |||||||| || | || Sbjct 559 GATCTTAGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCTAGAGTAATTGTCTT 618 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||||||||| ||||| || ||||| Sbjct 619 TCCGGTCAGAGTTTTAACAAAAATCTGCAT 648 >seq736048 Length=1016 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-G 27077 |||| || | ||| || | ||||| || | ||||| || || || || |||||||| | Sbjct 407 TGCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCG 466 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 | |||| || | ||||| ||||||||||| || | ||||| | ||| || || || Sbjct 467 CCAATGTC-CGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGG 525 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | |||||| || || ||| || ||||| | || | ||||||| ||| Sbjct 526 GGAATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCA 585 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || |||| ||| || || || || |||||||| |||||||| Sbjct 586 ACTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 635 >seq726932 Length=530 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | | || |||| || |||||||| || Sbjct 53 GTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCA 112 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | || || || || |||||| || Sbjct 113 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTG 172 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | |||||| ||||| ||||| | || ||||| || ||| Sbjct 173 ACATTGTCGATGGTGTCAGACGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTT 232 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 233 TTCACGAAGATCTGCAT 249 >seq620935 Length=1758 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| | | | || |||| || |||||||| || Sbjct 53 GTTGACTCCTTCTGGATATTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTGCCA 112 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || |||||||| | || || || || ||||||| || Sbjct 113 GCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 172 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | |||||| ||||| ||||| | || ||||| || || Sbjct 173 ACATTATCGATCGTGTCAGATGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTC 232 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 233 TTCACGAAAATCTGCAT 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421018513311000