Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq728136 109 7e-19 seq686278 107 2e-18 seq5092 104 3e-17 seq242768 100 4e-16 seq681135 98.7 1e-15 >seq728136 Length=2057 Score = 109 bits (120), Expect = 7e-19 Identities = 192/280 (69%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| || | | ||||| || ||||| |||||||||||||| | Sbjct 1814 AATCCATCCATCTCTGTCAACAGCTGATTGATGGTTTGCTCTCTCTCATCATTCCCACCT 1755 Query 11600 ATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 | ||| || | | ||| | ||||| |||||||| ||||||||||| ||||| || Sbjct 1754 CCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCAG 1695 Query 11660 GG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 || |||||||| || | ||||| | || || || || || ||||| | Sbjct 1694 GGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACTC 1640 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCAC 11774 | ||||||| || || || | | ||| | |||| || |||||| ||| || ||| | Sbjct 1639 CTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCTC 1580 Query 11775 CCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 | || | |||| ||| || |||||||| || || || || Sbjct 1579 CGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGG 1540 >seq686278 Length=2433 Score = 107 bits (118), Expect = 2e-18 Identities = 272/412 (66%), Gaps = 4/412 (1%) Strand=Plus/Plus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | |||||||| |||||||| | || ||||| | ||||| Sbjct 556 TCAAGAATGTCTGCCCTGTTAGTGGCTGCAATAACAATTATACCAGTGTTTCCTTCAAAA 615 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | || |||| |||||||| || ||||||||| || | | Sbjct 616 CCATCCATTTCAGTCAAAAGCTGGTTAAGAGTTTGTTCCCTTTCATCATTTCCT--CCTC 673 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | ||| || || |||||||| ||||||| || ||||| || | Sbjct 674 CAATTCCAGTTCCTCTTTGGCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAGG 733 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| || ||| | | || ||||| || || || ||||| |||||||||| Sbjct 734 GAGCATTCTCCTTGGCCTTCTTGAAAAGATCACGGACTCTAGATGCACCAACACCAACAA 793 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGA 11780 ||||||| ||||| | | | ||| || ||||| ||| || |||||| || | Sbjct 794 ACATCTCAACAAACTCAGAACCTGAGATAGAGAAAAATGGAACACCTGCTTCACCAGCAA 853 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGG 11840 | || || || || ||||| || || ||||| || | ||||| | ||| | Sbjct 854 TTGCCTTAGCTAGCAGAGTCTTCCCAGTTCCTGGAGGGCCAACAAGAAGAACACCTTTAG 913 Query 11841 GGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 | || || ||| | || |||||||||| | || ||||| ||||| Sbjct 914 GAATGCGAGCTCCAACTGCAGTGAATCTCTCGGGCTTTTTCAGAAACTCCAC 965 >seq5092 Length=1596 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| || |||||||| || || |||| || ||| ||||| || || Sbjct 860 TGGGGCCTTGGTGTTCCTGCATTGAAAAGAGTGGGTGAAGCATGAGTGAACCAACGCTGA 801 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 ||||| | |||||| | | ||||||||||||| ||| ||| || || | | Sbjct 800 GACATTAAATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATTCCAACAGAA 741 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 112120 || | ||| ||||||| ||| || |||| | | | || | | | | |||||| Sbjct 740 ACTCTCATCAACATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGATAG 681 Query 112121 CTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | ||||||||||||||| |||||||||| || | ||| ||||||| Sbjct 680 GACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCG 634 >seq242768 Length=840 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || || ||||||||||||||||| ||||| || ||||| | |||||||| | Sbjct 599 GGTAGAGCAATTGATGCCAAATTGCATACAGCAGTTTCATCGGCACTGGTGTACTCAATG 540 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || ||||||||||| ||| ||||| || |||| ||||| ||| ||||| || || Sbjct 539 ATCTCAGTACATAAGTTTGAAGATTTAATGGTACCCAGATTCTGTTGATTACTTTTTTTA 480 Query 111350 TTGCACGCATCCT 111362 ||||| | ||||| Sbjct 479 TTGCAAGAATCCT 467 >seq681135 Length=1827 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||| ||||| || || | ||||||||||| || || ||||||||||| || ||| Sbjct 590 CCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 649 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | ||| | || | |||||| |||||||||||||| || ||||| || || || Sbjct 650 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAAT 709 Query 122797 GCAAAAAGGCGTTCGGCGAAGG 122818 || | ||||||||||| |||| Sbjct 710 GCGAGCAGGCGTTCGGCAAAGG 731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622096116300000