Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq681135 100 3e-16 seq728136 87.8 2e-12 >seq681135 Length=1827 Score = 100 bits (110), Expect = 3e-16 Identities = 178/257 (69%), Gaps = 7/257 (3%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| || ||||| | ||||| ||||| | || ||||||||||| || ||| Sbjct 590 CCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTC 649 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| |||| || || || ||||||||||| || ||||| || ||||| Sbjct 650 TTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAAT 709 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 || | || || || ||||||| ||| || | ||| | |||||||| Sbjct 710 GCGAGCAGGCGTTCGGCAAAGGTTTCGGA---GCCGTCGATCCATCGGAGAGCCCACTGG 766 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT--G 130271 || || ||| | | ||| |||| ||| | ||| || | |||||| ||| |||||| Sbjct 767 GCTTTCTTCGCCACACAGGGGATGGTATCGATTGCGTGAAAGAG--CCTGTTTTTCTCCT 824 Query 130272 ATGGATCTTTGATGTAC 130288 |||||| ||||| ||| Sbjct 825 TTGGATCCTTGATATAC 841 >seq728136 Length=2057 Score = 87.8 bits (96), Expect = 2e-12 Identities = 188/281 (67%), Gaps = 10/281 (4%) Strand=Plus/Minus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || ||||||||||| ||||| || |||||||||||||| || | ||||||||| || Sbjct 1814 AATCCATCCATCTCTGTCAACAGCTGATTGATGGTTTGCTCTCTCTCATCATTCCCACCT 1755 Query 14213 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 | ||| || | | ||| | || || || ||||||||||| ||||| || || || Sbjct 1754 CCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCAG 1695 Query 14273 GG-----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACAC 14327 || |||||||| || ||||| | || || ||||| || || || | Sbjct 1694 GGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACTC 1640 Query 14328 CCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCAC 14387 | ||||||| || || || | | ||| | || || ||| || || | ||| | Sbjct 1639 CTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCTC 1580 Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | || | |||| ||| || |||||||| || || || ||| Sbjct 1579 CGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGGT 1539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612590021055000