Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq686278 125 8e-24 seq5092 104 3e-17 seq681135 95.1 1e-14 seq728136 86.0 7e-12 >seq686278 Length=2433 Score = 125 bits (138), Expect = 8e-24 Identities = 310/461 (67%), Gaps = 12/461 (3%) Strand=Plus/Plus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 ||||| || || | | || || || || || |||| ||||| |||||| || ||| Sbjct 556 TCAAGAATGTCTGCCCTGTTAGTGGCTGCAATAACAATTATACCAGTGTTTCCTT--CAA 613 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 |||||||||| || |||||||| ||||||| ||||||||||| ||||||||| || | Sbjct 614 AACCATCCATTTCAGTCAAAAGCTGGTTAAGAGTTTGTTCCCTTTCATCATTTCCT--CC 671 Query 9675 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | | | |||| | | ||| || || |||||||| ||||||| || || ||||| Sbjct 672 TCCAATTCCAGTTCCTCTTTGGCGCCCAACAGCATCAATTTCATCAACAAATACAATGCA 731 Query 9733 TGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 || ||| | | | | ||| ||| ||||| || || | || || ||||||| Sbjct 732 GGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGGACTCTAGATGCACCAACACCAA 790 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 |||||||||| ||||| | | | | | || | || || || ||| | |||||| Sbjct 791 CAAACATCTCAACAAACTCAGAACCTG-AGATAGAGAAAAATGGAACACCTGCTTCACCA 849 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 ||||| || || || |||||||| || || ||||| || | || || ||||| Sbjct 850 GCAATTGCCTTAGCTAGCAGAGTCTTCCCAGTTCCTGGAGGGCCAACAAGAAGAACACCT 909 Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATT 9970 ||||| || ||| | || | ||||||| || | || ||||| ||||| | | Sbjct 910 TTAGGAATGCGAGCTCCAACTGCAGTGAATCTCTCGGGCTTTTTCAGAAACTCCACTACT 969 Query 9971 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 || || || | ||| || | || | ||| ||||||| Sbjct 970 TCCATGAAATCTTGTTTTGCTTCATCTACCCCAGCAACATC 1010 >seq5092 Length=1596 Score = 104 bits (114), Expect = 3e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 104141 GACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCA-ACGGCT 104199 |||| |||| || ||| |||||| ||||||||||||||| | |||||| | | | | Sbjct 637 GACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCCTATCTCCTGAAGATT 696 Query 104200 CGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCA 104259 | | || ||| | |||| || ||| ||||||| ||| | || | | || ||||| Sbjct 697 CAAGGGAAGGTTG-TAGAAAGGCCTCAGCACATGTTGATGAGAGTTTCTGTTGGAATTCA 755 Query 104260 TGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCAT 104319 ||| ||||||||||||| | | |||||| | ||||| || || ||||| Sbjct 756 CAAGGATGACATTGATTCTGCTATCAAAACATACCATTTAATGTCTCAGCGTTGGTTCAC 815 Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAA 104365 ||| || |||| || || |||||||| || |||||||| |||||| Sbjct 816 TCATGCTTCACCCACTCTTTTCAATGCAGGAACACCAAGGCCCCAA 861 >seq681135 Length=1827 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| || || || ||||||| || || || || || ||||||||||| || || Sbjct 731 CCTTTGCCGAACGCCTGCTCGCATTCGCCTGCGTGGAAGGCATCTTCTTCTCCGGAAGCT 672 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||| | || | ||||| ||||| || ||||||||||| || | ||||| || | Sbjct 671 TCTGCTCGATATTCTGGCTAAAGAAACGCGGTCTCATGCCGGGATTAACTTTCTCAAATG 612 Query 94916 AGCTTATCTCTCGTGACGAGGG 94937 || | ||||| || |||||||| Sbjct 611 AGTTAATCTCGCGAGACGAGGG 590 >seq728136 Length=2057 Score = 86.0 bits (94), Expect = 7e-12 Identities = 187/280 (67%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || ||||||||||||||||| || || || || ||||| || | ||||||||| | Sbjct 1814 AATCCATCCATCTCTGTCAACAGCTGATTGATGGTTTGCTCTCTCTCATCATTCCCACCT 1755 Query 9674 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | ||| || | | ||| | ||||| |||||||| ||||||||||| || ||||| Sbjct 1754 CCAAGACCTGCCCCTCTCTGCCTCCCCACTGCATCAATTTCATCAATGAACACAATGCAG 1695 Query 9734 GG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 || |||||||| || ||||| | ||||| || | || ||||| | Sbjct 1694 GGTGCCTTTGATTTT-----GCCTTCTCAAACAAGTCCCGGACTCTGGATGCTCCCACTC 1640 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | ||||||| || || || | | ||| | || || ||| || ||| | ||| | Sbjct 1639 CTACAAACAATTCAACGAATTCAGAGGCTGCGCACGAGAAGAATGGCACACCTGCTTCTC 1580 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || | |||| ||| || || ||||| || || || || Sbjct 1579 CGGCCACTGCTCTGGCCAGTAGGGTCTTGCCGGTTCCGGG 1540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577748074095000