Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq736048 132 3e-26 seq109077 111 1e-19 seq689433 98.7 6e-16 seq620935 89.7 3e-13 seq662336 84.2 1e-11 >seq736048 Length=1016 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||||||||| | ||| | ||||| || || ||| ||| || || ||||||||||| | Sbjct 636 GCCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGC 695 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| || | || || || || ||||| |||||||| | | ||| ||||| || || Sbjct 696 CAATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGG 755 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||| ||||| ||| || || ||| |||||| |||||| | Sbjct 756 AATACCCTCCTTGTCCTGGAT-TTTTGCTTTGACATTATCAATGGTGTCTGAGCTCTCAA 814 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || ||||| || || | || ||||||||||| |||||| Sbjct 815 CTTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCATG 864 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| | ||| | ||||| || || || ||||| || ||||| || || | Sbjct 408 GCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAGTCCGC 467 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| || | ||||| || |||||||| |||||||| | | ||| ||||| || || Sbjct 468 CAATGTCCGACCATCTTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGGTCTGGGGG 527 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||| ||| | ||| || || || |||||| ||||| | Sbjct 528 AATACCCTCCTTGTCCTGGAT-TTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCAA 586 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || ||||| || || | || ||||||||||| |||||| Sbjct 587 CTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCATG 636 Score = 104 bits (114), Expect = 1e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 || ||||| ||||| || ||||| || | | ||||||||| || || | || |||||| Sbjct 25 TCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGAATGCCTTCCTTG 84 Query 34612 TCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 || ||| ||||| || || | |||||||||| |||||| ||||| | || || Sbjct 85 TCC-TGAATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCAAGAGTGAT 143 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||||| ||||| || ||||||||||||||||| Sbjct 144 TGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCAT 179 Score = 86.0 bits (94), Expect = 4e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| ||||| | ||||| || || ||| |||||| || ||||||||||| | Sbjct 864 GCCACCTCTCAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCAGC 923 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| || | || || || || ||||| ||||| || | | ||| ||||| || || Sbjct 924 CAATGTCCGGCCATCCTCCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGAGG 983 Query 34599 CACTCCCTCCTTGTCTGTGATCTTT 34623 | ||||||||||| ||||||| Sbjct 984 AATACCCTCCTTGTCCTGGATCTTT 1008 >seq109077 Length=726 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||| ||||| || ||| || |||||||| ||||| | ||| |||||| Sbjct 203 AGACGAAGCACCAAGTGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTTCGC 262 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || || || || || | ||| |||||||| || | |||||| Sbjct 263 CCATCCTCAAGCTGCTTGCCCGCGAAAATCAACCTCTGCTGGTCCGGTGGAATCCCCTCC 322 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | ||| || | || || || |||||| || || | ||| Sbjct 323 TTGTC-CTGAATCTTCGCTTTCACATTGTCGATGGTATCCGAGCTCTCAACCTCTAAGGT 381 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || ||||| || ||||| || ||||||||| Sbjct 382 AATTGTCTTGCCAGTTAAAGTCTTCACGAAGATCTGCATG 421 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||| || || || ||| || |||||||| ||||| | || ||||| ||||||| Sbjct 440 ACCAAGTGAAGTGTTGACTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGCCGTCTTCC 499 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || || || || | | ||| |||||||| || | |||||||| || | Sbjct 500 AGCTGCTTCCCTGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCCTGG 559 Query 34618 ATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||||| | ||| ||| | ||| ||||| ||| || || || | || || || || Sbjct 560 ATCTTA-GCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCTAGAGTAATTGTCTT 618 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||||| |||||||||||||| Sbjct 619 TCCGGTCAGAGTTTTAACAAAAATCTGCAT 648 >seq689433 Length=414 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || |||||| |||||| |||||||| ||||| | | Sbjct 248 CCCCCACGAAGACGAAGGACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCA 189 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | || || | || || || || || || | | ||| || || || || Sbjct 188 AGTGTCCGACCATCCTCCAACTGCTTCCCTGCGAAGATCAGCCTCTGCTGATCTGGAGGG 129 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||| ||| | || || || || || ||| ||||||||| Sbjct 128 ATCCCCTCCTTGTC-CTGAATTTTGGCCTTCACATTATCTATGGTATCTGAGCTCTCCAC 70 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || ||||| || || || | || |||||||| |||||||| Sbjct 69 CTCTAGTGTGATCGTCTTTCCCGTCAGGGTCTTCACAAATATCTGCAT 22 >seq620935 Length=1758 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || || | ||||| ||||| || |||||| || || || || || | Sbjct 21 CGCCACCACGGAGGCGGAGCACCAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGG 80 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || ||||| |||| || || ||||| || || || || | ||||| |||||||||| Sbjct 81 CTAGGGTTCGGCCGTCCTCCAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCG 140 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCC 34656 | | || ||||||||| |||||| | || || || || ||||| || Sbjct 141 GGATGCCTTCCTTGTCTTGGATCTTG-GCCTTGACATTATCGATCGTGTCAGATGATTCA 199 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || | |||||| || || || |||| || ||||| ||||||||||| || Sbjct 200 ACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATCTT 252 >seq662336 Length=3756 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || ||||| | ||| || | || || ||| ||| ||||| ||||||||||||| | Sbjct 299 CCTCCCCTAAGCCTCAAAACAAGGTGAAGTGTGGACTCTTTTTGGATGTTATAATCTGCA 240 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| |||||||| || ||||| || || | ||| || || || || Sbjct 239 AGAGTGCGACCATCTTCCAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGGA 180 Query 34600 ACTCCCTCCTTGTC 34613 | || |||||||| Sbjct 179 ATGCCTTCCTTGTC 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 311829280677125