Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq109077 122 7e-23 seq726932 118 9e-22 seq702768 116 3e-21 seq689433 104 2e-17 seq313781 93.3 4e-14 >seq109077 Length=726 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||||||||| ||| | |||||||| || || ||| ||| Sbjct 648 ATGCAGATTTTTGTTAAAACTCTGACCGGAAAGACAATTACTCTAGAGGTCGAAAGCTCC 589 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || || || || || || ||||| ||||| || || Sbjct 588 GACACCATTGACAACGTGAAAGCTAAGATCCAGGATAAGGAGGGCATTCCACCGGACCAG 529 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || |||||||| | || | | ||||||||| Sbjct 528 CAGAGGCTGATTTTCGCAGGGAAGCAGCTGGAAGACGGCCGAACTCTCGCGGATTACAAC 469 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| || | || ||||| | || | || |||||||| Sbjct 468 ATTCAGAAAGAGTCAACACTTCACTTGGTCCTCCGCCTCCGTGGTGGCAT 419 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| | || |||||| | ||||| | || || || || Sbjct 421 CATGCAGATCTTCGTGAAGACTTTAACTGGCAAGACAATTACCTTAGAGGTTGAGAGCTC 362 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || ||| || ||||| ||||| || || || ||||| || || Sbjct 361 GGATACCATCGACAATGTGAAAGCGAAGATTCAGGACAAGGAGGGGATTCCACCGGACCA 302 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||| ||||| || | || || | || || | |||||||| Sbjct 301 GCAGAGGTTGATTTTCGCGGGCAAGCAGCTTGAGGATGGGCGAACTCTTGCTGATTACAA 242 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||| ||| | || ||||| | ||| |||| ||||| || Sbjct 241 CATTCAGAAAGAGTCTACCCTCCACTTGGTGCTTCGTCTGCGTGGTGGTAT 191 >seq726932 Length=530 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || ||| | || || || || || ||| |||| Sbjct 249 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCGTCT 190 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || || || ||||| |||||||| ||||| || || Sbjct 189 GACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCGGACCAG 130 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || ||||| |||| ||| | ||| | |||| |||||| Sbjct 129 CAGCGTCTCATCTTCGCTGGAAAACAGCTGGAGGACGGCCGAACCCTAGCCGACTACAAC 70 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||||||| | || |||| | || | || |||||| Sbjct 69 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGCCTCCGTGGTGGC 22 >seq702768 Length=508 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || ||||| || ||| | ||||| || || || || || Sbjct 101 ATGCAGATATTTGTGAAGACCCTGACGGGAAAGACAATTACACTAGAGGTTGAGAGCTCA 160 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||||||| ||||| ||||| || || || ||||| Sbjct 161 GACACTATAGATAATGTGAAGGCAAAAATTCAGGACAAGGAAGGGATCCCTCCAGATCAG 220 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || ||||| || || ||| || | ||||||||| Sbjct 221 CAGAGGCTCATCTTTGCAGGGAAGCAGTTGGAGGATGGTCGGACTCTTGCTGATTACAAC 280 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || | || |||||| | ||| | || || || Sbjct 281 ATTCAGAAGGAGTCTACTCTTCACTTGGTTCTTCGTCTTCGTGGGGG 327 >seq689433 Length=414 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || ||||| || ||| | || || || || ||||| || Sbjct 22 ATGCAGATATTTGTGAAGACCCTGACGGGAAAGACGATCACACTAGAGGTGGAGAGCTCA 81 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || |||||||| ||||| || || || || || ||||| Sbjct 82 GATACCATAGATAATGTGAAGGCCAAAATTCAGGACAAGGAGGGGATCCCTCCAGATCAG 141 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || ||||| || || ||| || | ||||||||| Sbjct 142 CAGAGGCTGATCTTCGCAGGGAAGCAGTTGGAGGATGGTCGGACACTTGCTGATTACAAC 201 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || | || ||||| | ||| | || || || Sbjct 202 ATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGTCTTCGTGGGGG 248 >seq313781 Length=385 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || || || || || ||| |||||| | ||||| | || ||| || ||||| ||| Sbjct 2 ATCACCCTGGAGGTCGAAAGCTCCGACACCATTGACAACGTGAAAGCGAAGATTCAGGAC 61 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || ||||| || ||||| || || ||| | | || | ||||||||| || | || || Sbjct 62 AAGGAAGGGATTCCACCAGACCAGCAGAGACTGATTTTCGCCGGCAAGCAGCTTGAGGAT 121 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 | || || | |||||||||||||| |||||||| ||| | || ||||| | ||| Sbjct 122 GGGCGAACTCTTGCTGATTACAACATTCAGAAGGAGTCTACCCTCCACTTGGTGCTTCGT 181 Query 27204 TTGCGGGGTGGCAT 27217 |||| ||||| || Sbjct 182 CTGCGCGGTGGTAT 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430913678532125