Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq551508 268 1e-66 seq516297 262 5e-65 seq545415 159 4e-34 seq616439 136 5e-27 seq753951 120 4e-22 seq161073 114 2e-20 seq493281 98.7 1e-15 seq212858 95.1 1e-14 seq666543 86.0 7e-12 seq711014 84.2 3e-11 >seq551508 Length=510 Score = 268 bits (296), Expect = 1e-66 Identities = 351/486 (72%), Gaps = 0/486 (0%) Strand=Plus/Plus Query 176439 TTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGT 176498 ||||||||| || | ||||||||||||| | | || | ||||| |||||||| ||| Sbjct 17 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGCTATGCGCCCTTGGATTGTTGT 76 Query 176499 TGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCA 176558 |||||| || || || || | || || | || ||||| | |||| ||| | ||||| Sbjct 77 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCA 136 Query 176559 AGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGT 176618 |||| || | ||||||||||||||| | || || ||||| |||||||| ||| |||| Sbjct 137 AGGAAGCTTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTCATGATTGT 196 Query 176619 ATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGT 176678 |||||| | ||||||||||| || |||||||||||||| ||| | | ||||| ||||| Sbjct 197 ATTCCAGGTTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGATGTAGCTGGTGT 256 Query 176679 GTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAG 176738 || || || || || ||| ||| ||||| || | || || ||| | | || Sbjct 257 ATTCGGCGGTTCCCTATTCAGAGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATAAG 316 Query 176739 AGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGAC 176798 || || || |||| ||||| || |||||||||||||| ||||| ||||| || Sbjct 317 GGAAACCACAAAAAATGAATCTGCTAATGCAGGTTACAAATTCGGTCAAGAGGAAGAAAC 376 Query 176799 ATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTT 176858 || || ||||| ||||| | ||||| ||||| || | || ||||| |||||| ||| Sbjct 377 TTATAATATTGTGGCTGCTCCAGGTTATTTTGGCCGATTGATATTCCAATATGCTAGTTT 436 Query 176859 CAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTT 176918 |||||| ||| | | | | |||||||| || || | || || || | |||||||| Sbjct 437 CAATAATTCATGTTCTTTAAATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 496 Query 176919 TACTGC 176924 ||||| Sbjct 497 CACTGC 502 >seq516297 Length=515 Score = 262 bits (290), Expect = 5e-65 Identities = 370/516 (72%), Gaps = 3/516 (1%) Strand=Plus/Minus Query 176569 TCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCA 176628 ||||||||||||||||| || || || ||||| |||||||| ||| |||||||| | || Sbjct 515 TCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCTAGGCT 456 Query 176629 GAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGA 176688 ||||||||||| || |||||| ||||||| ||| |||| ||| ||||| |||||||| Sbjct 455 GAGCACAACATCCTTATGCACTCATTCCACATG-TTGGCATAGTTGGTGTATTTGGTGGT 397 Query 176689 TCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACC 176748 || || ||| | ||||| || | || || ||| | |||| || || | Sbjct 396 TCCCTATTCAGTGTTATGCATGGTTCATTGGTAACCTCTAGTTTGATTAGGGAAACCATA 337 Query 176749 GAAAACGAATC-ACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACAT 176807 ||||| ||||| | || || ||||||| ||||| ||||| ||||| || || || || Sbjct 336 GAAAATGAATCTGCGAATGTA-GGTTACACATTCGATCAAGATGAAGAAACTTATAATAT 278 Query 176808 TGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTC 176867 | ||||| || ||||| | |||||| | || ||||| |||||| |||||||| || Sbjct 277 TACGGCTGCTCATGGTTATTCTGGTCGATTGATTTTCCAATATGCTATATTCAATAATTC 218 Query 176868 AAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAAT 176927 | | | || |||||||| | || | || | || | |||||||| | ||| | Sbjct 217 TCGTTCTTTACATTTCTTCCTAGTTGCTTGGCCTATAGTAGGTATCTGGTTCATTGCTTT 158 Query 176928 GGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGA 176987 ||| | ||| || | ||| |||| || |||||||| |||||||| ||| | | || Sbjct 157 AGGTATCAACACTCTGACTTTCTACCTAAATGGTTTCAATTTCAACCAATCTATAGTTGA 98 Query 176988 CAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTAT 177047 | ||| || ||| ||| | || ||||| | || ||||| ||||||||||| Sbjct 97 TAGTCAAGGTTGTGTAATTAATACTTAGGCTGATATTATAAATCGTGCTAACCTTGGTAT 38 Query 177048 GGAAGTTATGCACGAGCGTAATGCTCACAACTTCCC 177083 |||||||||||| || ||||||||||| || ||||| Sbjct 37 GGAAGTTATGCATGAACGTAATGCTCATAATTTCCC 2 >seq545415 Length=298 Score = 159 bits (176), Expect = 4e-34 Identities = 213/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 176779 TTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTT 176838 ||||| ||||| ||||| || || || ||||| ||||| || ||||| ||||| | | Sbjct 1 TTCGGTCAAGAGGAAGAAACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCTGATTG 60 Query 176839 ATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTC 176898 |||||| | |||||| |||| |||| || | | | || |||||| | || || | Sbjct 61 ATCTTCTAATATGCTAGTTTCTATAATTCTCGTTCTTTACATTTCTTCATAGCTGCTTGG 120 Query 176899 CCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAAC 176958 | || || | |||||||| | ||| | ||| | |||| ||| | |||||||| || Sbjct 121 CTTGTAGTAGGTATCTGGTTCATTGCTTTAGGTATCGGCACTATGACTTTCAACCTAAAT 180 Query 176959 GGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGA 177018 |||||||| || ||||| ||| | | || | | ||| || ||| ||| |||| Sbjct 181 GGTTTCAATTTTAACCAATCTATAGTTGATAGCCAAGGTCGTGTAATTAATACTTGGGCT 240 Query 177019 GATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCA 177074 ||| | | |||||||| ||||||||||||||||||||||| || |||||||||| Sbjct 241 GATTTTATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAATGTAATGCTCA 296 >seq616439 Length=1776 Score = 136 bits (150), Expect = 5e-27 Identities = 204/287 (71%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 |||| ||||| ||||||| | || || || |||| |||||||| ||| |||||||| | Sbjct 185 TTCTATGATGATATGCCTTTAGGAATCTCTAGTACTTTCAACTTCATGATTGTATTCTAG 244 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 | ||||||||||| || ||||||| |||||| || | || |||| ||||| |||| | Sbjct 245 GTTGAGCACAACATCCTTATGCACCTATTCCACTTGTTAGGTGTAGTTGGTGTATTTGAT 304 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTG-TTAGAGAGAC 176744 | ||| | ||| | ||||| || ||||| || || ||| | | || || Sbjct 305 GAGTCTTTATTCAATGTTATGCATGG-TTTCTTGGTAACCTTTAGTTTGATCAAGGAAAC 363 Query 176745 AACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAA 176804 || |||| |||| || || ||||||||||||| ||||| ||||| || || || Sbjct 364 CACAAAAAATGAATTTGTTAATTAAGGTTACAAATTCGATCAAGATGAAGAAACTTATAA 423 Query 176805 CATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATG 176851 || |||| ||| || ||||| ||| |||| | || || || |||| Sbjct 424 TATCGTAGTTGCTCATGGTTATTTTAGTCGATTGATTTTTCAATATG 470 >seq753951 Length=5828 Score = 120 bits (132), Expect = 4e-22 Identities = 151/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 176455 TGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 176514 ||||||||||| | | |||| |||||||||||||| |||| |||| || | | Sbjct 1777 TGGGAACTTAGATTTTGTCTAGATATGCGTCCTTGGATTGTTGTTACATATTCAACTCTT 1718 Query 176515 GTATCTGCAG---CGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCT 176571 || || || | || | |||||| | || | | | |||||||| || || ||| Sbjct 1717 GT---TGTAGTTACTATTGTTGTTTTCTTGATCAACCTAATCGGTCAATGAAACTTTTCT 1661 Query 176572 GATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAG 176631 |||||||| |||| || |||| ||||| |||||||| ||| |||||||||| || ||| Sbjct 1660 AATGGTATGTCTCTAGGACTTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAG 1601 Query 176632 CACAACATTCTAATGCACCCATTCCA 176657 ||| ||||| |||||||||||||| Sbjct 1600 TACATCATTCCTATGCACCCATTCCA 1575 >seq161073 Length=246 Score = 114 bits (126), Expect = 2e-20 Identities = 174/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 176368 GTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATC 176427 ||||| |||||| | |||||||| || || || | || |||| | |||| | | | Sbjct 3 GTTGATGAATGGTTATACAATGGTGGCCCTTATGAGCTAATTGTTCTACACTACTTACTT 62 Query 176428 GGTATCTCAGCTTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCT 176487 ||| | | ||||||||| || | | ||||||||||| | ||||| |||| | | Sbjct 63 GGTGTAGCTTTTTACATGGGTCGTGAGTAGGAACTTAGTTTCCATCTAGGTATGCACCAT 122 Query 176488 TGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAG---CGATGGCAGTTTTCCTCGTC 176544 ||||| ||||||||| | || || ||| ||||| | | || |||||| | || Sbjct 123 TGGATTGTTGTTGCATATTTAGCTCC--TAT-TGCAGCTACTACTGCTGTTTTCTTGATC 179 Query 176545 TATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTC 176604 || ||| | ||| ||||| || ||||||||||||||||| || || || ||||| ||| Sbjct 180 TACCCAATTGGTTAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTC 239 Query 176605 AACTT 176609 ||||| Sbjct 240 AACTT 244 >seq493281 Length=200 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 176257 GAACCAGTAGCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCA 176316 ||||| || | ||||||||||| ||||||||||| || ||||| || || || | || Sbjct 199 GAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCTGGTGCCATCATTCCT 140 Query 176317 AGCTCAAACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAA 176376 | || || || || | ||||| |||||||| | ||||||| || | ||||| ||| Sbjct 139 ACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATAGGAAGCAACATCCGTTGATGAA 80 Query 176377 TGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCA 176436 ||| | |||||||| || || || | || |||| | |||||| | | ||| | | Sbjct 79 TGGTTATACAATGGTGGTCCTTATAAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 20 Query 176437 GCTTACATGGGACG 176450 ||||||||| || Sbjct 19 TGTTACATGGGTCG 6 >seq212858 Length=258 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 176962 TTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGAT 177021 ||||| |||||||| ||||| | || | | ||| || ||| ||| ||| ||| Sbjct 258 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGTGTAATTAATACTTGGACTGAT 199 Query 177022 ATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTC 177081 || | |||||||| |||||||||||| |||||||||| || ||||||||||| || ||| Sbjct 198 ATTATCAACCGTGCTAACCTTGGTATGAAAGTTATGCATGAACGTAATGCTCATAATTTC 139 Query 177082 CCACTTGACCTTGCT 177096 || || || || ||| Sbjct 138 CCTCTAGATCTAGCT 124 >seq666543 Length=3475 Score = 86.0 bits (94), Expect = 7e-12 Identities = 169/249 (68%), Gaps = 1/249 (0%) Strand=Plus/Plus Query 176338 CACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCA 176397 || || || ||||| |||||||| ||| | ||||| |||| | | ||||||| || || Sbjct 2113 CATTTTTATCCAATATGGGAAGCCGCATCTGTTGATGAATAGTTATACAATGATGGTCCT 2172 Query 176398 TACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGG 176457 || | || |||| | |||||| | | || | | ||||||||| || | ||| Sbjct 2173 TATAAGCTAATTGTCCTACACTTCTTATTTAGTGTAGCTTGTTACATGGGTCGTGAGTGG 2232 Query 176458 GAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTA 176517 |||||||||| | | || ||||| | || ||| |||| |||| || || | || Sbjct 2233 GAACTTAGTTTCCATTTGGGTATGCGCCTTTAGATTGTTGTTACATATTCAGCTTCTGTT 2292 Query 176518 TCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGG-ATCTTTCTCTGATGG 176576 | || | | | |||||| | |||| ||| | |||||||| | |||| | |||| Sbjct 2293 ACAGCTACTACTGTTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTTTCAATGG 2352 Query 176577 TATGCCTCT 176585 |||||||| Sbjct 2353 CATGCCTCT 2361 >seq711014 Length=229 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 176583 TCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCT 176642 ||| || || || ||||| |||||||| || |||||||||| || ||||||||||| || Sbjct 145 TCTAGGAATCTCTGGTACCTTCAACTTCATTATTGTATTCCAGGCTGAGCACAACATCCT 204 Query 176643 AATGCACCCATTCCATATG 176661 |||||||||||||| ||| Sbjct 205 TATGCACCCATTCCACATG 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597790434960000