Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq736048 120 3e-22 seq726932 87.8 2e-12 >seq736048 Length=1016 Score = 120 bits (132), Expect = 3e-22 Identities = 176/247 (71%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||| |||||||| || | ||||| || || ||| |||||| | Sbjct 622 ACAAAAATTTG--CATGCCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCT 679 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || |||||||| || | ||| || | || || ||||| || || ||||||||||| | Sbjct 680 GGATGTTATAATCAGCCAATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCC 739 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||||||| | ||| | | ||| |||||| |||||| ||||| | | | | Sbjct 740 TCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTTTGCTTTGACATTATCAATGG 799 Query 39221 TATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 | || ||| ||| || || | |||||| ||||||| || || || || ||||| | Sbjct 800 TGTCTGAGCT---CTCAACTTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAA 856 Query 39278 TTTGCAT 39284 ||||||| Sbjct 857 TTTGCAT 863 >seq726932 Length=530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || ||||| | Sbjct 34 GCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCC 93 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTT 39187 ||| || |||||||| || || || || ||||||||||||| ||||||| | || || | Sbjct 94 GTCCTCCAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG-ATGCCTTCCT 152 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 ||||| ||| || |||| | | | || || ||| || || || | || | Sbjct 153 TGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGACGATTCAACCTCTAGGGTTA 212 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || ||||| || ||||| || ||||| |||||||| Sbjct 213 TGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425587219842125