Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17]
756,125 sequences; 432,755,284 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq736048 116 2e-21
seq662336 104 2e-17
seq702768 98.7 7e-16
seq620935 98.7 7e-16
seq109077 91.5 1e-13
>seq736048
Length=1016
Score = 116 bits (128), Expect = 2e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||| || || |||||||| |||||||| ||||| || |||||||| | |
Sbjct 863 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAAGTTGAGAGCTCA 804
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| |||||| | ||||| || ||| | || ||||| ||
Sbjct 803 GACACCATTGATAATGTCAAAGCAAAAA-TCCAGGACAAGGAGGGTATTCCCCCAGACCA 745
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | |||||||| || || || || || || | || || || | ||||| ||
Sbjct 744 GCAGAGGCTTATATTTGCTGGTAAGCAGCTCGAGGATGGCCGGACATTGGCTGATTATAA 685
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| || ||||||||||| | || || |||
Sbjct 684 CATCCAGAAAGAGTCCACCCTTCACTTGGTT 654
Score = 96.9 bits (106), Expect = 2e-15
Identities = 131/180 (73%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || || ||| | || || ||||| |||||||| |||||||| | |
Sbjct 179 ATGCAGATTTTTGTGAAGACCTTAACTGGTAAAACAATCACTCTTGAAGTTGAGAGCTCA 120
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | ||||||| ||||| ||||| | || || || ||
Sbjct 119 GACACAATTGACAATGTCAAGGC-AAAAATTCAGGACAAGGAAGGCATTCCTCCTGACCA 61
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||| | | || ||||| || ||||| || || || | |||||||| | || |||||
Sbjct 60 ACAGAGGCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTTTGGCTGACTACAA 1
>seq662336
Length=3756
Score = 104 bits (114), Expect = 2e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763
||||| ||||| | || || ||||| ||| | || || ||||| |||||||||||||||
Sbjct 166 GACAAGGAAGGCATTCCTCCTGATCAGCAGAGATTGATTTTTGCTGGCAAACAACTGGAA 225
Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823
|| | |||||| | | ||||| ||||| ||||||||||||||| | || | |||||
Sbjct 226 GATGGTCGCACTCTTGCAGATTATAACATCCAAAAAGAGTCCACACTTCACCTTGTTTTG 285
Query 23824 AGGTTGCGAGGAGGA 23838
||| | | ||||||
Sbjct 286 AGGCTTAGGGGAGGA 300
>seq702768
Length=508
Score = 98.7 bits (108), Expect = 7e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||| |||||||| || || || || || ||||| | |
Sbjct 101 ATGCAGATATTTGTGAAGACCCTGACGGGAAAGACAATTACACTAGAGGTTGAGAGCTCA 160
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| | || ||| | || |||||| || ||||| ||||| | || ||||||||
Sbjct 161 GACACTATAGATAATGTGAAGGCAAAAA-TTCAGGACAAGGAAGGGATCCCTCCAGATCA 219
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| || || || |||| || | || ||| | | ||||||||
Sbjct 220 GCAGAGGCTCATCTTTGCAGGGAAGCAGTTGGAGGATGGTCGGACTCTTGCTGATTACAA 279
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| || || ||||| || | || || |||
Sbjct 280 CATTCAGAAGGAGTCTACTCTTCACTTGGTT 310
>seq620935
Length=1758
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| || ||||| ||||| || || || || || || ||||| ||
Sbjct 252 AAGATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATAACCCTAGAGGTTGAATCA 193
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | || || ||||| ||||| | ||||| ||
Sbjct 192 TCTGACACGATCGATAATGTCAAGGC-CAAGATCCAAGACAAGGAAGGCATCCCGCCGGA 134
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| ||||| | || || || |||||||| ||||| |||| || || ||| ||| ||
Sbjct 133 CCAGCAGCGCCTCATCTTCGCTGGCAAACAGCTGGAGGACGGCCGAACCCTAGCCGACTA 74
Query 23787 CAACATACAAAAAGAGTCCAC 23807
||| || || || ||||| ||
Sbjct 73 CAATATCCAGAAGGAGTCAAC 53
>seq109077
Length=726
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||||||||| |||||||| || || ||||| || || ||||| || || || | |
Sbjct 649 AATGCAGATTTTTGTTAAAACTCTGACCGGAAAGACAATTACTCTAGAGGTCGAAAGCTC 590
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| | | ||| || || || || || || | || || || ||
Sbjct 589 CGACACCATTGACAACGTGAAAGCTAAGATCCAGGATAAGGAGGGCATTCCACCGGACCA 530
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || || || || || || |||||||||| || ||| | | ||||||||
Sbjct 529 GCAGAGGCTGATTTTCGCAGGGAAGCAGCTGGAAGACGGCCGAACTCTCGCGGATTACAA 470
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| || |||||||| ||| | || || ||
Sbjct 469 CATTCAGAAAGAGTCAACACTTCACTTGGT 440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334894749111500
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |