Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq681135 125 6e-24 >seq681135 Length=1827 Score = 125 bits (138), Expect = 6e-24 Identities = 545/849 (64%), Gaps = 15/849 (2%) Strand=Plus/Plus Query 4277 CTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATT 4336 ||| |||||||| || || || || | || || || ||||| | || |||||||| Sbjct 298 CTTCTCGAAGAAGTTGGTCTTTCCCTGCAAAGAGATTAGCTCCATCCAGTCGAACGGATT 357 Query 4337 AGTTGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATT 4395 | ||||||| || || || || || | |||| || || || || |||| Sbjct 358 CGAAACGTTGTACATCTTCCCGTAACCCAAG-GCGCCGAGCAGGCGATCGGCAACGAATT 416 Query 4396 CTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-ATCTCACAGGTAGCGCGTAT 4454 | || || || ||||| || | | ||| || || | || | | ||| |||| ||||| Sbjct 417 CGATGTATTGACTCATTAGAGCACTGTTCATCCCCACTAGAGCGCAC-GGTAACGCGTCG 475 Query 4455 GTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTA 4514 | |||||| ||||||| || | || | || || | || | | | || | Sbjct 476 CAGACGAACTCTCTTTCTATATCCACCGAGTCGGCGACGATTGCCTTCACTCTCTCCTCG 535 Query 4515 GATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAACCTTC 4573 | ||||||| ||||||| | | | || ||||| ||||| || || || || || Sbjct 536 CTTAGTTTATTC-CTAAGTAGGCTGTAGAGCAAGCACGCGAAATCGCAGTGTAAGCCCTC 594 Query 4574 GTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAA 4632 ||||| || | || | || || || || |||||||| ||||| | ||| | || || | Sbjct 595 GTCTC-GCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTCTTTA 653 Query 4633 GCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTA 4692 |||| ||||| | | || || || ||||| |||||||| ||| ||| || || | Sbjct 654 GCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAATGCGA 713 Query 4693 CTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTT 4752 | || | || | || ||| |||||| | ||||| | |||| Sbjct 714 GCAGGCGTTCGGCAAAGGTTTCGGAGCCGTCG---ATCCATCGGAGAGCCCACTGGGCTT 770 Query 4753 TTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGT 4812 | ||| || || || || || | || |||| ||| | | |||| || ||| | Sbjct 771 TCTTCGCCACACAGGGGATGGTATCGATTGCGTGAAAGAGCCTGTTTTTCTCCTTTGGAT 830 Query 4813 CTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAA 4872 | | ||||| | |||| | || || ||||| ||||| || || ||||| || |||| Sbjct 831 CCTTGATATACGATTCTAACAACAGACTGTACATCTCAGAGTGGATGTTTTCAATGGCAA 890 Query 4873 TCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA 4932 |||||||||| || ||| | ||| || | || || || || || || ||| | Sbjct 891 TCTGAAATCCATAGAAGGCACGAGCCTCGGAGACCTGGACCTCCTTCATGAACCTTCCGG 950 Query 4933 CTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAA 4992 | | |||||| || || |||||| || || || || || | | |||| || | Sbjct 951 CGAGATTTTCGAGGACGATTCCGTCAGAAGCGGCGAAGAAGGCAAGGATATGACTGATGA 1010 Query 4993 AGTACTGTTCGTCAGGCT--TAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||| || ||||| ||| | || |||| ||| || || || | || | || || Sbjct 1011 AGTGCTTCTCGTC--GCTGGTGAGGTTTTCCCATTGACGCTGGTCCTGAGAGAGGTCGAC 1068 Query 5051 TTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATA 5110 ||| || | |||||||||||||| || || || |||||||| ||| | |||| || Sbjct 1069 TTCCTCGGCGGTCCAAAACGACGCCTCGGCCTTCTTGTACATTTCCCAGACTGCAGGGTA 1128 Query 5111 CTGAATCGG 5119 ||||||||| Sbjct 1129 CTGAATCGG 1137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423114221164625