Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20aestivalis_20[genbank_20GCA_5F001562795.1_202016-02-17] 756,125 sequences; 432,755,284 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq750760 138 1e-27 seq620935 120 3e-22 seq313781 111 1e-19 seq109077 102 7e-17 seq736048 95.1 1e-14 >seq750760 Length=1299 Score = 138 bits (152), Expect = 1e-27 Identities = 172/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || | || || | ||||| || || || ||||||||| ||||| ||||| | Sbjct 363 CGCCACCTCTGAGGCGGAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAG 304 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||| || |||| ||||||||||| ||||||||||| ||||| || ||||||| | Sbjct 303 CTAGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCGAATATGAGGCGTTGCTGGTCCGGAG 244 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 ||| || ||||||||| ||| || |||| || | | | ||||| |||||| Sbjct 243 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACATTGTCGATGGTGTCAGAGGACTCC 185 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | ||||| || |||||||| || || || ||||| |||||||| || Sbjct 184 ACCTCAAGGGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 132 >seq620935 Length=1758 Score = 120 bits (132), Expect = 3e-22 Identities = 169/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || || | |||||| || || || ||||||||| || || ||||||| Sbjct 21 CGCCACCACGGAGGCGGAGCACCAGGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGG 80 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||||| || |||| || ||||| ||||| ||||| || |||||||| ||||||| | Sbjct 81 CTAGGGTTCGGCCGTCCTCCAGCTGTTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCG 140 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-CGACACAGTGTCGCTCGACTC 41811 | | || |||||||| ||| || ||| | | | ||| ||||| || || Sbjct 141 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATC--GTGTCAGATGATTC 198 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | ||||| || || ||||| || ||||| |||||||||||||| || Sbjct 199 AACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATCTT 252 >seq313781 Length=385 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| | ||||| | | | || || |||||||| |||||||| Sbjct 385 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCGGCGAA 326 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 ||||| | ||| || |||| || | | |||||||||| ||| | ||||||| || Sbjct 325 GATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCC-TGAATCTTTGCTTTGACAT 267 Query 41791 CGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 || | ||||| ||||||||||| ||| || || || || ||||| ||||| | Sbjct 266 TATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTTCCAGTCAGTGTCTTCA 207 Query 41850 CGAAAATCTGCAT 41862 |||| || ||||| Sbjct 206 CGAAGATTTGCAT 194 Score = 98.7 bits (108), Expect = 9e-16 Identities = 112/149 (75%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||||| || || || ||||||||||||||| || || | Sbjct 192 CCACCGCGCAGACGAAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 133 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || ||| | || || ||||||||||||||||| ||||| | ||| ||||| | ||| Sbjct 132 AGAGTTCGCCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGA 73 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT 41784 | | ||||||||| ||| | || |||| Sbjct 72 ATCCCTTCCTTGTCC-TGAATCTTCGCTT 45 >seq109077 Length=726 Score = 102 bits (112), Expect = 7e-17 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| | ||||| | | | || || |||||||| || ||||| Sbjct 1 CTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTGCTTCCCAGCGAA 60 Query 41731 TATCAGGCGCTGTTGGTCCGC-GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG 41789 |||| | ||| || |||| |||| | || ||||||||| ||| | ||||||| || Sbjct 61 GATCAATCTCTGCTGATCCGGTGGGATCCCT-TCCTTGTCC-TGAATCTTTGCTTTCACA 118 Query 41790 ACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTT 41848 || | ||||| ||||||||||| ||| || || || || ||||| ||||| Sbjct 119 TTATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTCCCAGTCAGAGTCTTC 178 Query 41849 ACGAAAATCTGCAT 41862 ||||| || ||||| Sbjct 179 ACGAAGATTTGCAT 192 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||| || || || ||| ||||||||||| || || | Sbjct 421 GCCACCACGGAGGCGGAGGACCAAGTGAAGTGTTGACTCTTTCTGAATGTTGTAATCCGC 480 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| || || |||| || |||||||| || ||||| ||||| | ||| ||||||| || Sbjct 481 GAGAGTTCGGCCGTCTTCCAGCTGCTTCCCTGCGAAAATCAGCCTCTGCTGGTCCGGTGG 540 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||| ||| || | || |||| ||| | | | |||||| || | Sbjct 541 AATGCCCTCCTTATCC-TGGATCTTAGCTTTCACGTTGTCAATGGTGTCGGAGCTTTCGA 599 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || ||||| || || || ||||||||||| Sbjct 600 CCTCTAGAGTAATTGTCTTTCCGGTCAGAGTTTTAACAAAAATCTGCAT 648 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || ||| ||||||||||| || || | Sbjct 194 CCACCACGCAGACGAAGCACCAAGTGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGCA 253 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || ||| | || || ||||||||||| ||||| |||| | ||| ||||||| ||| Sbjct 254 AGAGTTCGCCCATCCTCAAGCTGCTTGCCCGCGAAAATCAACCTCTGCTGGTCCGGTGGA 313 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | | |||||||||| ||| | || |||| || | | | || || ||| ||| Sbjct 314 ATCCCCTCCTTGTCC-TGAATCTTCGCTTTCACATTGTCGATGGTATCCGAGCT---CTC 369 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || || || | ||||| ||||| ||||||||| Sbjct 370 AACCTCTAAGGTAATTGTCTTGCCAGTTAAAGTCTTCACGAAGATCTGCATG 421 >seq736048 Length=1016 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | || ||| | |||| || || ||| ||| ||||| |||||||| || | Sbjct 636 GCCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGC 695 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || | || ||||||||||| || || ||||| || | ||| ||||| | ||| Sbjct 696 CAATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGG 755 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 || | |||||||||| || ||||||||| || | | ||||| ||| || Sbjct 756 AATACCCTCCTTGTCC-TGGATTTTTGCTTTGACATTATCAATGGTGTCTGAGCT---CT 811 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || || | || || ||||| || || || ||||| || ||||| |||||| Sbjct 812 CAACTTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCATG 864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 457934504850000