Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq149226 104 5e-17 seq99529 104 5e-17 seq82795 104 5e-17 seq62995 104 5e-17 seq35580 104 5e-17 seq165622 100 6e-16 seq125879 100 6e-16 seq90360 100 6e-16 seq54142 100 6e-16 seq145223 98.7 2e-15 seq145222 98.7 2e-15 seq51434 98.7 2e-15 seq203223 95.1 3e-14 >seq149226 Length=15826 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 2843 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2902 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2903 CCCACGGTGGGC 2914 >seq99529 Length=2389 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 378 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 437 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 438 CCCACGGTGGGC 449 >seq82795 Length=1924 Score = 104 bits (114), Expect = 5e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC-ATGAACGCTGAACT 230468 |||| |||||| | || ||||| | || || ||| || ||| |||||| || || Sbjct 401 GAAAGAGAGTTCGTCTGCGACGCGTTACCGTG-CGCTCTAGTGGGGATGAACAGTGCTCT 459 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | || |||||||||||||| ||||| ||| | | | || | ||||||| ||| Sbjct 460 AATGAGTCAATACATCGAATTCGTTGCCGATCGCCTGCTCGGCGCCTTGGGTTACGGGAA 519 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| | ||| || || | | |||||||| || || | || || ||||| Sbjct 520 GATGTACAACGTTTCGAATCCGTTCGACTGGATGGAGCTAATCTCTTTGCAGGGAAAGAC 579 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||||||| ||| | || | || ||||||| | || |||||| Sbjct 580 CAACTTCTTCGAGAAGAGGGTTGGGGAATATCAGAAGGCTTCAGTGATG 628 >seq62995 Length=6809 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 4619 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4560 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4559 CCCACGGTGGGC 4548 >seq35580 Length=8099 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 2080 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2021 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2020 CCCACGGTGGGC 2009 >seq165622 Length=2091 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||| ||||||||||| || || |||| || ||||||||||||||||| Sbjct 1948 TGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2007 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 2008 CCCCACGGTGGGC 2020 >seq125879 Length=7901 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 1922 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1981 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 1982 CCCCACGGTGGGC 1994 >seq90360 Length=3361 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||||||||||||| ||||||||||| || || |||| || ||||||||||||||||| Sbjct 143 TGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 83 CCCCACGGTGGGC 71 >seq54142 Length=14225 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 9634 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9693 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 9694 CCCCACGGTGGGC 9706 >seq145223 Length=14229 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 14058 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13999 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13998 CCCACGGTGGGC 13987 >seq145222 Length=5345 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3437 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3378 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3377 CCCACGGTGGGC 3366 >seq51434 Length=4198 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 92 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 33 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 32 CCCACGGTGGGC 21 >seq203223 Length=1923 Score = 95.1 bits (104), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC-ATGAACGCTGAACT 230468 |||| |||||| | || ||||| | || || ||| || ||| |||||| || || Sbjct 401 GAAAGAGAGTTCGTCTGCGACGCGTTACCGTG-CGCTCTAGTGGGGATGAACAGTGCTCT 459 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | || |||||||||||||| ||||| ||| | | | || | ||||||| ||| Sbjct 460 AATGAGCCAATACATCGAATTCGTTGCCGATCGCCTGCTCGGCGCCTTGGGTTACGGGAA 519 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| | ||| || || | | ||||| || || || | || || ||||| Sbjct 520 GATGTACAACGTTTCGAATCCGTTCGACTGGATGGAACTAATCTCTTTGCAGGGAAAGAC 579 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||||||| ||| | || | || || |||| | || |||||| Sbjct 580 CAACTTCTTCGAGAAGAGGGTTGGGGAGTACCAGAAGGCTTCAGTGATG 628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1054971774603720