Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq82795 96.9 4e-15 >seq82795 Length=1924 Score = 96.9 bits (106), Expect = 4e-15 Identities = 219/327 (67%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 16964 CATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAAC 17023 || ||||||||||| ||||| |||||||||| ||| | || || || || || || Sbjct 324 CACGCGAAATCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTTAAT 265 Query 17024 CCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAAT 17083 || ||||| || |||||||||| ||| ||||||| | ||| || || ||||| Sbjct 264 CCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAA 205 Query 17084 ATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA 17143 || || || ||| | || || |||| | |||||||| | || || || || Sbjct 204 ATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGT--CG- 148 Query 17144 ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTA 17203 |||||| | |||||| |||||| | | | || || || || || || | | Sbjct 147 ATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTGCGTGA 88 Query 17204 AATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATT 17263 || | | | ||| |||| | | || | ||||||| || | | || |||||||| Sbjct 87 AAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGTACATC 28 Query 17264 TCGGAGTGTATGTTCTCCATGGCTATC 17290 |||||||| ||||| || ||||| ||| Sbjct 27 TCGGAGTGGATGTTTTCAATGGCAATC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516184170421920