Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq144336 98.7 7e-16 seq144321 98.7 7e-16 >seq144336 Length=10423 Score = 98.7 bits (108), Expect = 7e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||||||||||||||| || || | || ||| |||||||||||||||||| || | Sbjct 5873 ACATGAGCAATCATGCATGTCAATAAAGCATAAGAAGCAATGTTAAATGGCACACCAAGA 5932 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAAT 101875 ||||||||||| || ||||||| ||||||||| |||| |||| |||||||| Sbjct 5933 CCCATATCAGCAGAGTGCTGATACATTTGACAGGATAGCTCCCCATTGGCTACATAAAAC 5992 Query 101876 TG 101877 || Sbjct 5993 TG 5994 >seq144321 Length=9550 Score = 98.7 bits (108), Expect = 7e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||| ||||||||||| || || | || ||| |||||||||||||||||| || | Sbjct 4966 ACATGGGCAATCATGCATGTCAATAAAGCATAAGAAGCAATGTTAAATGGCACACCAAGA 5025 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAAT 101875 ||||||||||| || | ||||||| ||||||||| |||| |||| |||||||| Sbjct 5026 CCCATATCAGCAGAGCGCTGATACATTTGACAGGATAGCTCCCCATTGGCTACATAAAAC 5085 Query 101876 TG 101877 || Sbjct 5086 TG 5087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360324667889444