Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq44755 98.7 8e-16 seq207794 91.5 1e-13 >seq44755 Length=3421 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | || ||| |||| || || ||||| || ||| ||| | | Sbjct 2284 AATGCAAATATTTGTGAAGACACTGACTGGAAAGACCATCACTCTTGAAGTGGAGAGCTC 2225 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || | ||| ||| || || || || ||| | ||| |||||| Sbjct 2224 TGACACAATCGACAATGTGAAGGCAAAGATCCAAGACAAGGAGGGTATCCCCCCAGATCA 2165 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || |||||||| || ||||| || || ||| | ||| |||| |||||||| Sbjct 2164 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACAA 2105 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||||| |||||||| ||||||||| | || | || | || |||||| Sbjct 2104 CATTCAAAAGGAATCCACTCTTCACCTAGTTCTTCGCCTTCGTGGAGGG 2056 >seq207794 Length=1432 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | || ||| |||| || || ||||| || ||| ||| | | Sbjct 1116 AATGCAAATATTTGTGAAGACACTGACCGGAAAGACCATCACTCTTGAAGTGGAGAGCTC 1057 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || | ||| ||| || || || || ||| | ||| ||||| Sbjct 1056 TGACACAATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCA 997 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || |||||||| || ||||| || || ||| | ||| |||| |||||||| Sbjct 996 GCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACAA 937 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||||||| || |||||| |||| | || | || ||||| Sbjct 936 CATTCAAAAGGAATCCACCCTTCACCTGGTTCTTCGCCTTCGTGGAGG 889 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| ||||| | || || ||||||| || || ||||| || ||| | | Sbjct 888 AATGCAGATATTTGTGAAGACCCTGACGGGAAAGACGATTACACTAGAGGTGGAGAGCTC 829 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | ||| ||||||| || || ||||| | || |||||| Sbjct 828 AGACACCATAGATAATGTGAAGGCAAAAATTCAGGACAAGGAAGGGATCCCTCCAGATCA 769 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || |||||||| || || || |||| ||| ||| | || |||||||| Sbjct 768 GCAGAGGCTCATCTTTGCAGGGAAGCAGTTGGAGGATGGTCGGACTCTTGCTGATTACAA 709 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||||| |||||||||||| |||| Sbjct 708 CATTCAGAAGGAGTCTACTCTTCACTTGGT 679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427237409716820