Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq144321 95.1 8e-15 seq144336 86.0 4e-12 >seq144321 Length=9550 Score = 95.1 bits (104), Expect = 8e-15 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 97120 ACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGT 97179 |||||||| ||||| || || |||| || ||| |||||||||||| ||||| || || Sbjct 4966 ACATGGGCAATCATGCATGTCAATAAAGCATAAGAAGCAATGTTAAATGGCACACCAAGA 5025 Query 97180 CCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAAC 97239 ||||||||||| || | ||||| | |||||||| |||| |||| ||||||||| Sbjct 5026 CCCATATCAGCAGAGCGCTGATACATTTGACAGGATAGCTCCCCATTGGCTACATAAAAC 5085 Query 97240 TG 97241 || Sbjct 5086 TG 5087 >seq144336 Length=10423 Score = 86.0 bits (94), Expect = 4e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 97120 ACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGT 97179 ||||| || ||||| || || |||| || ||| |||||||||||| ||||| || || Sbjct 5873 ACATGAGCAATCATGCATGTCAATAAAGCATAAGAAGCAATGTTAAATGGCACACCAAGA 5932 Query 97180 CCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAAC 97239 ||||||||||| || ||||| | |||||||| |||| |||| ||||||||| Sbjct 5933 CCCATATCAGCAGAGTGCTGATACATTTGACAGGATAGCTCCCCATTGGCTACATAAAAC 5992 Query 97240 TG 97241 || Sbjct 5993 TG 5994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345894573165080