Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq127437 132 7e-26 seq44755 123 4e-23 seq207794 120 5e-22 seq73220 116 6e-21 seq144321 86.0 9e-12 seq137659 84.2 3e-11 >seq127437 Length=6100 Score = 132 bits (146), Expect = 7e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | |||||||| || || || || || || | || |||| ||| Sbjct 2697 AATGCAAATATTTGTTAAGACACTCACTGGAAAGACCATCACCCTTGAAGTTGAGAGC-T 2639 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| ||| ||| |||| |||||| ||||| || ||||| || || ||||||| Sbjct 2638 CTGATACGATTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGATC 2579 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | |||||| | |||||||| ||||| || | |||||| | | || || | ||||||| Sbjct 2578 AGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCCGATTATA 2519 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | ||||| ||||| || || | || |||| | ||||| ||||||| || Sbjct 2518 ACATTCAGAAAGAGTCCACACTCCACCTGGTCCTCCGTTTGAGAGGTGGAAT 2467 Score = 96.9 bits (106), Expect = 5e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| ||||||| || || || || || || ||| | ||| | || ||| Sbjct 2241 AATGCAAATATTTGTAAAGACGCTGACCGGGAAGACCATCACTCTTGAGGTGGAGAGC-T 2183 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| ||||| ||| | || ||| || ||||| || || ||||| || || |||| Sbjct 2182 CTGACACAATCGACAATGTGAAGGCGAAGATCCAAGACAAGGAGGGTATCCCCCCAGATC 2123 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||| || ||||| | |||||| | | || | | ||||| | Sbjct 2122 AGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACCCTGGCTGATTACA 2063 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| ||||| || | || | ||| | || | || || ||||| Sbjct 2062 ACATACAAAAGGAATCCACCCTTCACCTTGTTCTTCGCCTTCGTGGAGGTAT 2011 >seq44755 Length=3421 Score = 123 bits (136), Expect = 4e-23 Identities = 178/247 (72%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | |||||||| || || || || || || | || |||| ||| Sbjct 2740 AATGCAAATATTTGTTAAGACACTCACCGGAAAGACCATCACCCTTGAAGTTGAGAGC-T 2682 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 |||||| || ||| |||| |||||| ||||| || ||||| || || ||||| | Sbjct 2681 CCGATACAGTTGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCTGACC 2622 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | |||||| | |||||||| ||||| || | |||||| | |||| || | |||||||| Sbjct 2621 AGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGAACGTTGGCAGATTATA 2562 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAAT 124775 | ||||| || || || || |||| |||| | || || | ||||| || ||| || Sbjct 2561 ACATTCAGAAGGAGTCCACACTGCACCTGGTCCTTCGCTTGAGGGGTGGAATGCAAATAT 2502 Query 124776 TCATAAA 124782 | |||| Sbjct 2501 TTGTAAA 2495 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| |||||||||| || || || || || || | ||| | ||| Sbjct 2512 AATGCAAATATTTGTAAAGACACTGACTGGAAAGACCATCACACTTGAGGTGGAAAGCTC 2453 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| |||||| ||||| || ||||| || || || || || Sbjct 2452 TGATACAATCGACAATGTAAAGGCGAAAATCCAAGACAAGGAAGGAATCCCCCCAGACCA 2393 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | |||||||| ||||| || | |||||| | | || || | ||||||||| Sbjct 2392 GCAAAGGTTGATTTTTGCCGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAA 2333 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | || | ||| | || | ||||||| || Sbjct 2332 CATTCAGAAGGAGTCCACACTCCACCTTGTTCTTCGCCTGAGAGGTGGAAT 2282 Score = 93.3 bits (102), Expect = 6e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | |||||||| || || || || || ||| | || | || ||| Sbjct 2284 AATGCAAATATTTGTGAAGACACTGACTGGAAAGACCATCACTCTTGAAGTGGAGAGC-T 2226 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| ||||| ||| | || || || ||||| || || ||||| || || |||| Sbjct 2225 CTGACACAATCGACAATGTGAAGGCAAAGATCCAAGACAAGGAGGGTATCCCCCCAGATC 2166 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||| || ||||| | |||||| | | || | | ||||| | Sbjct 2165 AGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACA 2106 Query 124717 ATATTCAAAAAGAATCAACT 124736 | |||||||| ||||| ||| Sbjct 2105 ACATTCAAAAGGAATCCACT 2086 >seq207794 Length=1432 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||||||| ||||||||||||| || || || || || | ||| | ||| Sbjct 1344 AATGCAAATATTTGTAAAGACACTAACTGGAAAGACCATCACGCTTGAGGTGGAAAGCTC 1285 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| ||||| ||||| || ||||| || || || || || Sbjct 1284 TGATACAATCGACAATGTAAAGGCAAAAATCCAAGACAAGGAAGGAATCCCCCCAGACCA 1225 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | |||||||| ||||| || | |||||| | | || || | ||||||||| Sbjct 1224 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAA 1165 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | || | ||| | || | ||||||| || Sbjct 1164 CATTCAGAAGGAGTCCACACTCCACCTTGTTCTTCGCCTGAGAGGTGGAAT 1114 Score = 87.8 bits (96), Expect = 3e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | |||||||| || || || || || ||| | || | || ||| Sbjct 1116 AATGCAAATATTTGTGAAGACACTGACCGGAAAGACCATCACTCTTGAAGTGGAGAGC-T 1058 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||| ||||| ||| | || || || || || || || ||||| || || |||| Sbjct 1057 CTGACACAATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATCCCCCCCGATC 998 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| || ||||| || ||||| | |||||| | | || | | ||||| | Sbjct 997 AGCAGAGGCTCATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTGGCTGATTACA 938 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 | |||||||| ||||| || | || ||||| Sbjct 937 ACATTCAAAAGGAATCCACCCTTCACCTGGTT 906 >seq73220 Length=12354 Score = 116 bits (128), Expect = 6e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || || ||||| |||||| | || |||| | Sbjct 8055 ATGCAGATCTTTGTTAAGACCCTTACTGGAAAAACCATAACTCTTGAAGTTGAGAGTTCT 7996 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || ||||| ||||| || || ||||| || ||||| || Sbjct 7995 GATACCATTGACAATGTTAAGGCA-AAAATCCAAGACAAGGAGGGTATCCCCCCTGACCA 7937 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | |||||||| ||||| || | |||||| || | || || | |||||||| Sbjct 7936 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAGGATGGTAGGACTTTGGCCGATTATAA 7877 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| || || | || | || | ||||| |||| || || Sbjct 7876 CATTCAAAAAGAGTCCACCCTACACCTTGTACTTCGTTTGAGAGGAGGAAT 7826 Score = 102 bits (112), Expect = 1e-16 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||||||| | || || ||||| || || || || || | || |||| || Sbjct 7828 AATGCAAATATTTGTCAAAACGCTAACTGGAAAGACCATCACACTTGAAGTTGAGAGTTC 7769 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | ||||||||| ||| | || || || || || || || ||||| || || || | Sbjct 7768 A-GATACAATTGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGTATTCCTCCAGACC 7710 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || |||||||| ||||| || || || | |||||| | || ||||| | ||||||| Sbjct 7709 AGCAGAGGCTTATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGGACATTGGCTGATTATA 7650 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 | || || || || || || | || |||||| | ||| | ||||||| || ||| || Sbjct 7649 ACATCCAGAAGGAGTCCACCCTTCACTTGGTTCTCCGTCTGAGAGGTGGCATGCAAATTT 7590 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| | ||||| || || || |||||||| || | || |||| || | Sbjct 7143 ATGCAAATATTTGTGAAGACCCTTACTGGTAAAACTATCACCCTTGAAGTTGAGAGTTCA 7084 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | ||| ||| | || || || |||||||| ||||| || || Sbjct 7083 -GACACTATCGACAATGTGAAAGCAAAACTCCAGGACAAGGAAGGTATTCCACCGGACCA 7025 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || || |||| ||| ||||||| || | || || || Sbjct 7024 GCAGAGGCTAATCTTTGCTGGTAAGCAGCTAGAAGATGGTCGAACTTTGGCTGACTACAA 6965 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || |||||||| | || | ||| | || | || || ||||| Sbjct 6964 TATACAGAAGGAATCAACCCTTCACCTTGTTCTCCGCCTGCGTGGGGGTAT 6914 >seq144321 Length=9550 Score = 86.0 bits (94), Expect = 9e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 205449 ATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACC 205508 ||| |||||||| | ||||||||| |||| ||||| |||||||| ||||| | ||| Sbjct 4968 ATGGGCAATCATGCATGTCAATAAAGCATAAGAAGCAATGTTAAATGGCACACCAAGACC 5027 Query 205509 CATATCAGCTGATCTTTGATACATTTGACA 205538 ||||||||| || | |||||||||||||| Sbjct 5028 CATATCAGCAGAGCGCTGATACATTTGACA 5057 >seq137659 Length=869 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 205828 GATCCATTTTCATCCCAAATATGGATTCCTTTATTTTTTAGAATATTTGTATTAGTTGAT 205887 ||| |||| ||||||| ||||| ||||| || | | ||| | |||| ||| ||||| Sbjct 427 GATGCATTGCCATCCCATATATGAATTCCATTTTCCTGTAGGACCTTTGCATTTGTTGAG 368 Query 205888 CCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGTA 205947 ||| || ||||| || | |||||||||||| | || |||||| | | || |||||| Sbjct 367 CCATTGATGAACCACAACAGTTCTTCAACAATCCATCACCAAAATACTTTCTTAGTTGTA 308 Query 205948 AATAATGGAAA 205958 | |||||||| Sbjct 307 AGAAATGGAAA 297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 753468735219200