Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq76562 104 3e-17 seq127437 95.1 2e-14 seq207794 91.5 2e-13 seq44755 91.5 2e-13 >seq76562 Length=2025 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || || | || | || || ||||| || ||||||||| Sbjct 1666 GTTCCTCCCCTGAGCCTCAAAACAAGGTGAAGTGTGGACTCTTTTTGGATGTTATAATCT 1725 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| | | ||| || |||||||| ||||||||||||||||| |||||||| ||| Sbjct 1726 GCAAGAGTGCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGA 1785 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 1786 GGAATGCCTTCCTTGTCCTG 1805 >seq127437 Length=6100 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/230 (67%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | | | |||| || | || || ||||| || |||||||| | Sbjct 2468 TTCCACCTCTCAAACGGAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCGG 2527 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| |||| ||| || | || ||||||||||||||||| ||||||||||| || | Sbjct 2528 CCAAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCAGGGG 2587 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | |||||||| || ||||| ||||| || || || | Sbjct 2588 GGATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATCGTATCAGAGCTCTCAA 2647 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| || ||||| || || || || | ||| |||| |||||||||||| Sbjct 2648 CTTCAAGGGTGATGGTCTTTCCAGTGAGTGTCTTAACAAATATTTGCATT 2697 >seq207794 Length=1432 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/183 (68%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||||| | ||| |||| ||| || | || ||||||||||||||||| ||| Sbjct 1162 ATGTTATAATCTGCCAAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTT 1221 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 ||||| || || || |||||||| || ||||| ||| Sbjct 1222 TGCTGGTCTGGGGGGATTCCTTCCTTGTCTTGGATTTTTGCCTTTACATTGTCGATTGTA 1281 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || || ||||| || || || ||||| || || || |||| ||| || | ||||||||| Sbjct 1282 TCAGAGCTTTCCACCTCAAGCGTGATGGTCTTTCCAGTTAGTGTCTTTACAAATATTTGC 1341 Query 146276 ATT 146278 ||| Sbjct 1342 ATT 1344 >seq44755 Length=3421 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/183 (68%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||||| | ||||||| ||| || | || ||||||||||||||||| ||| Sbjct 2558 ATGTTATAATCTGCCAACGTTCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTT 2617 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 ||||| || || || |||||||| || ||||| ||| Sbjct 2618 TGCTGGTCAGGGGGGATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAACTGTA 2677 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || || || || ||||| || ||||| || || || || | ||| |||| ||||||||| Sbjct 2678 TCGGAGCTCTCAACTTCAAGGGTGATGGTCTTTCCGGTGAGTGTCTTAACAAATATTTGC 2737 Query 146276 ATT 146278 ||| Sbjct 2738 ATT 2740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741570516628480