Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq207794 107 1e-18 seq73220 107 1e-18 seq44755 96.9 3e-15 seq121659 89.7 4e-13 seq127437 87.8 1e-12 seq76562 86.0 5e-12 >seq207794 Length=1432 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || || | ||| |||| |||||| || ||||| |||||||||||||| || || Sbjct 888 TCCTCCACGAAGGCGAAGAACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGC 947 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | | ||| || | ||||| || ||| |||| || || || ||||| ||| Sbjct 948 CAGAGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCGGGGGG 1007 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || || | | ||| || | | | |||||| | ||| Sbjct 1008 GATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATTGTGTCAGAGCTCTCCAC 1067 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| |||||| | || ||||||| ||| || ||||| ||||||||| Sbjct 1068 TTCAAGAGTGATGGTCTTTCCGGTCAGTGTCTTCACAAATATTTGCATT 1116 >seq73220 Length=12354 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| || | |||||| || |||||||| || ||||||||||||||| Sbjct 6689 CCTCCACGAAGGCGAAGAACAAGGTGAAGCGTAGATTCTTTCTGTATGTTGTAGTCGGCC 6748 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | ||||| || ||| |||| || || ||||| || || Sbjct 6749 AAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGA 6808 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || ||||| | |||||| | ||| ||||| | ||| | Sbjct 6809 ATGCCTTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACT 6868 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| |||| || || || || || |||||||| ||||| Sbjct 6869 TCAAGAGTGATTGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCAT 6915 >seq44755 Length=3421 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| || | |||||| || ||||| |||||||||||||| || ||| Sbjct 2057 CCTCCACGAAGGCGAAGAACTAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGCC 2116 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | ||| || | ||||| || ||| |||| || || || ||||| ||| Sbjct 2117 AGAGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGGG 2176 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || || | | ||| || | | | |||||| | ||| | Sbjct 2177 ATACCCTCCTTGTCTTGGATCTTTGCCTTCACATTGTCGATTGTGTCAGAGCTCTCCACT 2236 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| |||||| | || || |||| ||| || ||||| ||||||||| Sbjct 2237 TCAAGAGTGATGGTCTTTCCAGTCAGTGTCTTCACAAATATTTGCATT 2284 >seq121659 Length=2328 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | || |||| ||| || ||||| ||||||||||||||||||||||| Sbjct 91 CCTCCACGAAGACGGAGCACCAAGTGCAGAGTTGACTCTTTTTGAATGTTGTAGTCGGCG 150 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||||| || || || || |||| || || || || || || Sbjct 151 AGGGTTCGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTCTGCTGGTCTGGTGGA 210 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| |||||||| || | ||| || | ||| ||||| | ||| Sbjct 211 ATGCCCTCCTTATCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCGACC 270 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | || ||||| | ||||| |||||||| ||||| Sbjct 271 TCCAGGGTGATGGTCTTCCCGGTAAGGGTTTTCACAAAAATCTGCAT 317 >seq127437 Length=6100 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||||| || || ||||| ||||||||||| || |||| || || ||| Sbjct 2257 AGAACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCCAAGGTCCGACCATCC 2316 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || ||| |||| || || || || || ||| | || ||||| || Sbjct 2317 TCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCT 2376 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| | ||| || | ||| |||||| ||| ||||| ||||||| || Sbjct 2377 TGGATTTTTGCCTTTACATTGTCAATCGTGTCAGAACTCTCTACTTCAAGGGTGATGGTT 2436 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || || | ||| || ||||| ||||||||| Sbjct 2437 TTTCCAGTGAGTGTCTTAACAAAGATTTGCATT 2469 >seq76562 Length=2025 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | || | ||||||||| || |||||||| ||||| || || || Sbjct 1668 TCCTCCCCTGAGCCTCAAAACAAGGTGAAGTGTGGACTCTTTTTGGATGTTATAATCTGC 1727 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || |||||||||||||||||| ||| | || | ||| || ||||| || Sbjct 1728 AAGAGTGCGACCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGG 1787 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||| || Sbjct 1788 AATGCCTTCCTTGTC 1802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378371063724780