Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq73220 84.2 2e-11 seq44755 82.4 6e-11 >seq73220 Length=12354 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| || |||||||| || ||||| || || | || || || |||| Sbjct 6915 ATGCAGATTTTTGTGAAGACCTTAACTGGTAAAACAATCACTCTTGAAGTTGA---GAGC 6859 Query 24892 ---GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 |||| | || | ||| |||| ||||||| | || |||||| | || |||| Sbjct 6858 TCAGACACAATTGACAATGTCAAGGCAAAAATTCAGGACAAGGAAGGCATTCCTCCTGAC 6799 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 || || | | || | ||| || ||||| || || ||| | ||| || ||| ||| Sbjct 6798 CAACAGAGGCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACTTTGGCCGACTAC 6739 Query 25009 AGCATACAGAAAGAGGCCACGCTTCA 25034 | |||||||||||| | |||||||| Sbjct 6738 AACATACAGAAAGAATCTACGCTTCA 6713 >seq44755 Length=3421 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| |||||||||||| | || || || || |||||| | || || ||| Sbjct 2967 ATGCAGATCTTTGTTAAAACCCTTACTGGGAAGACTATAACCCTTGAAGTGGAAAGTTCT 2908 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | || | |||||||| ||||| | || ||||| | || ||||||| Sbjct 2907 GATACCATTGACAATGTTAAGGCGAAAATCCAAGACAAGGAAGGTATCCCCCCTGACCAG 2848 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | || || | ||| || || || || || ||| || |||| || ||||| | | Sbjct 2847 CAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAGGATGGCAGGACTTTGGCAGATTATAAC 2788 Query 25012 ATACAGAAAGAGGCCACGCTTCA 25034 || ||||||||| |||| || || Sbjct 2787 ATTCAGAAAGAGTCCACACTCCA 2765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417231139652480