Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq82795 123 3e-23 seq74520 89.7 6e-13 seq173968 84.2 3e-11 >seq82795 Length=1924 Score = 123 bits (136), Expect = 3e-23 Identities = 229/332 (69%), Gaps = 8/332 (2%) Strand=Plus/Minus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 ||| || |||||||||||||| | |||||||||| ||||| || || || || || Sbjct 328 CAAGCACGCGAAATCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGT 269 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 | ||| ||||| || || || || || ||||| ||||| || ||| |||||| || Sbjct 268 TAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAA 209 Query 33698 GAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGT 33753 ||| || ||||| || ||| || || || | || | || || | ||| || || Sbjct 208 GAAAATGCCTTCCAC-GCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGT 150 Query 33754 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33813 | ||||| ||||||| | ||| ||||| ||||| || || || || || | Sbjct 149 C---GATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTG 93 Query 33814 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33873 | | |||||| |||||| || || ||| || | ||| | || | ||| ||||| | Sbjct 92 CGTGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGT 33 Query 33874 ACATTTCCGAATGAATGTTTTCAATGGCCATC 33905 |||| || || || |||||||||||||| ||| Sbjct 32 ACATCTCGGAGTGGATGTTTTCAATGGCAATC 1 >seq74520 Length=9548 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | || || ||||| || || ||||| | ||| | || || | Sbjct 4030 GTTCCTGCATTGAAAAGAGTGGGCGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 4089 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | ||||| || || || || | ||| |||||||| || | || | ||| || Sbjct 4090 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 4148 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| ||||| |||| || | || |||| | |||||| | || | Sbjct 4149 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAGGACCTCTCAAG 4208 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| |||||||| || | || |||||| || || ||||| || Sbjct 4209 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCGGTCATAAATGAT 4256 >seq173968 Length=7941 Score = 84.2 bits (92), Expect = 3e-11 Identities = 206/308 (67%), Gaps = 12/308 (4%) Strand=Plus/Minus Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941 || || |||||||||||||| ||||||||||| ||||| | |||||||| | ||| Sbjct 7941 GAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGGCGACCTGG 7882 Query 33942 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAA 34001 || || | || | | | || | ||||| || ||||| ||| || || || Sbjct 7881 ACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAGCGGCGAAG 7822 Query 34002 AACGCCAATACATGTTTTATAAAATATTTTTCGT--CTGGTGTTAGTTTATTCCAATCAT 34059 || || | | ||| | || || | || |||| |||||| || || |||| ||| Sbjct 7821 AAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTG--AGGTT-TTCC---CAT 7768 Query 34060 TGA----TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 ||| || | ||| | || ||||| || | |||||||| || ||||| ||||| Sbjct 7767 TGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCCTCGGCCTTC 7708 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || ||||| | ||||| ||| | || || || ||||| ||| || | || ||| || Sbjct 7707 TTGTACATTTCCCAGACTTCAGGGTACTGAATCGGGAACATACAGAACCGATCTGGGTTA 7648 Query 34176 GGTGCAAG 34183 || || || Sbjct 7647 GGAGCGAG 7640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628160833312320