Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq82795 118 1e-21 seq74520 89.7 7e-13 >seq82795 Length=1924 Score = 118 bits (130), Expect = 1e-21 Identities = 227/331 (69%), Gaps = 8/331 (2%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| || |||||||||||||||| |||||||||| ||||| || || || || || Sbjct 328 CAAGCACGCGAAATCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGT 269 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 36272 | ||| ||||| || || || || || ||||| ||||| || ||| || ||| || | Sbjct 268 TAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGA-GCAGAAGCTTCCGGAGA 210 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGT 36329 ||||||| ||||| || || || || | || | || || | ||| | || Sbjct 209 AGAAAATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGT 150 Query 36330 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 | ||||| ||||||| | ||| ||||| ||||| || || || || || | Sbjct 149 C---GATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTG 93 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | | |||||| |||||| || || ||| || | ||| | || | ||| ||||| | Sbjct 92 CGTGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGT 33 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCAT 36480 |||| || || || |||||||||||||| || Sbjct 32 ACATCTCGGAGTGGATGTTTTCAATGGCAAT 2 >seq74520 Length=9548 Score = 89.7 bits (98), Expect = 7e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| ||||| || | || || ||||| || || ||||| | ||| | || || | Sbjct 4030 GTTCCTGCATTGAAAAGAGTGGGCGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 4089 Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || | ||||| || || || || | ||| |||||||| || | || | ||| || Sbjct 4090 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 4148 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||||||||| ||||| || | ||| | || |||| | |||||| | || | Sbjct 4149 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAGGACCTCTCAAG 4208 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||||| |||||||| || | || |||||| || || ||||| || Sbjct 4209 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCGGTCATAAATGAT 4256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| ||||| | || | || |||| ||| | || | | ||| |||| ||| || Sbjct 3614 TCCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTAGCATAGGAACAATGCC 3673 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||||||||| ||||| || || ||||| ||||| | |||||||| ||| || || Sbjct 3674 ATTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCACGAATGTTATGAACAGA 3733 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||| || || || ||| | || || |||| || ||||| || Sbjct 3734 AACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTTAGAGTGTCATATAT 3793 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 || || ||||||||||| ||||| || || || |||||| Sbjct 3794 TCCTTCAATACTATCATCTTTCATGCAAATAAGGAAGCAGCTA 3836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656441443540960