Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq207794 109 5e-19 seq127437 109 5e-19 seq73220 105 7e-18 seq44755 104 2e-17 seq142724 89.7 5e-13 seq76562 82.4 8e-11 >seq207794 Length=1432 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| || || || ||||||||||| ||||| || || || || || Sbjct 906 AACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGCCAGAGTCCTTCCATCCTC 965 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||||||||| |||| || | ||||||||||| || || || || ||||| Sbjct 966 AAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCGGGGGGGATACCCTCCTTGTCCTG 1025 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| ||| || | | || | |||||| | | |||||| |||| || | ||||| Sbjct 1026 GATCTTTGCCTTCACATTGTCGATTGTGTCAGAGCTCTCCACTTCAAGAGTGATGGTCTT 1085 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| || || || ||||||||||| Sbjct 1086 TCCGGTCAGTGTCTTCACAAATATTTGCAT 1115 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||| | || ||||| || |||||||||||||| || || || || || Sbjct 1134 AACAAGGTGGAGTGTGGACTCCTTCTGAATGTTATAATCTGCCAAAGTCCTGCCATCCTC 1193 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || |||||| | |||| | |||||| || || || || ||||| ||||| Sbjct 1194 AAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTG 1253 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||||||| |||| | || | ||| || | | |||||||||| || | ||||| Sbjct 1254 GATTTTTGCCTTTACATTGTCGATTGTATCAGAGCTTTCCACCTCAAGCGTGATGGTCTT 1313 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || ||||| ||||||||||| Sbjct 1314 TCCAGTTAGTGTCTTTACAAATATTTGCAT 1343 >seq127437 Length=6100 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||||| || || || ||||| ||||| ||||| || || || || || Sbjct 2031 AACAAGGTGAAGGGTGGATTCCTTTTGTATGTTGTAATCAGCCAGGGTCCTTCCATCCTC 2090 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||||||||| |||| || | |||||||| || || || || || ||||| Sbjct 2091 AAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCTTG 2150 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | |||||| | | ||||||||||| || | ||||| Sbjct 2151 GATCTTCGCCTTCACATTGTCGATTGTGTCAGAGCTCTCCACCTCAAGAGTGATGGTCTT 2210 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| ||| ||||| ||||||||||| Sbjct 2211 CCCGGTCAGCGTCTTTACAAATATTTGCAT 2240 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| | || | ||| | || |||||||| ||||||||||||||| | Sbjct 2470 CCACCTCTCAAACGGAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCGGCC 2529 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || ||||| || |||||| | |||| | ||||||||| || || Sbjct 2530 AAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCAGGGGGG 2589 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| |||||| |||| | || | || || | | ||| || Sbjct 2590 ATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATCGTATCAGAGCTCTCAACT 2649 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| || || | || || || ||||||||||| Sbjct 2650 TCAAGGGTGATGGTCTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 2696 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| || |||| || |||||||| |||||||| ||||| || || | || || Sbjct 2259 AACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCCAAGGTCCGACCATCCTC 2318 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||||||||| |||| || | ||||| || || || || || || ||||| Sbjct 2319 AAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTG 2378 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||||||| |||| | || | ||||| | ||| || |||| ||| | || || Sbjct 2379 GATTTTTGCCTTTACATTGTCAATCGTGTCAGAACTCTCTACTTCAAGGGTGATGGTTTT 2438 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || || || || |||||||| Sbjct 2439 TCCAGTGAGTGTCTTAACAAAGATTTGCAT 2468 >seq73220 Length=12354 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||||| |||||| | ||| ||||||| || |||||||| || ||||||||||| Sbjct 7372 GCCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCTGGATGTTATAATCAGC 7431 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||| | || |||||||| ||||||||| | || || | ||||| || || || Sbjct 7432 CAATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCCTCTGCTGGTCTGGGGG 7491 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| |||||| ||| | | || | ||||| | | ||| || Sbjct 7492 AATACCCTCCTTGTCCTGGATTTTCGCTTTGACATTATCAATGGTGTCTGAGCTCTCAAC 7551 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || || | || || || || |||||||| Sbjct 7552 TTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 7599 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | ||| ||||||| || ||||| || || ||||||||||| Sbjct 7600 GCCACCTCTCAGACGGAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCAGC 7659 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||| | || || ||||| ||||||||| |||| || | ||||| || ||||| Sbjct 7660 CAATGTCCGGCCATCCTCCAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGAGG 7719 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| ||| || | | || | ||| || | ||| || Sbjct 7720 AATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCAATTGTATCTGAACTCTCAAC 7779 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || || | |||||| || ||||||||||| Sbjct 7780 TTCAAGTGTGATGGTCTTTCCAGTTAGCGTTTTGACAAATATTTGCAT 7827 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| | || | ||| | || |||||||||||||||||||||||| | Sbjct 7829 CCTCCTCTCAAACGAAGTACAAGGTGTAGGGTGGACTCTTTTTGAATGTTATAATCGGCC 7888 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || |||||||| || |||||| | |||| | |||||| || || || Sbjct 7889 AAAGTCCTACCATCCTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGG 7948 Query 139658 ATGCCTTCTTTGTCGGTGATTTTT 139681 || || || ||||| ||||||| Sbjct 7949 ATACCCTCCTTGTCTTGGATTTTT 7972 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| ||||| | ||| ||||||| |||||||| || || ||||| || || Sbjct 7144 GCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGC 7203 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||| | ||||| ||||||||||| ||| | || || | ||||| || || || Sbjct 7204 CAATGTCCGACCATCTTCCAGCTGTTTACCCGCAAATATGAGCCTCTGCTGGTCTGGGGG 7263 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| |||||| ||| | | || | ||||| | ||| || Sbjct 7264 AATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCAAC 7323 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || || || | || || || || |||||||| Sbjct 7324 TTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 7371 >seq44755 Length=3421 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||||| ||||| || || || ||||||||||| ||||| || || || || || Sbjct 2074 AACTAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGCCAGAGTCCTTCCATCCTC 2133 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||||||||||||| |||| || | |||||||| || || || || || ||||| Sbjct 2134 AAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCTTG 2193 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| ||| || | | || | |||||| | | |||||| |||| || | ||||| Sbjct 2194 GATCTTTGCCTTCACATTGTCGATTGTGTCAGAGCTCTCCACTTCAAGAGTGATGGTCTT 2253 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||| || || || ||||||||||| Sbjct 2254 TCCAGTCAGTGTCTTCACAAATATTTGCAT 2283 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || |||||||||||||| || || || || || ||||| || ||| Sbjct 2543 GTGGACTCCTTCTGAATGTTATAATCTGCCAACGTTCTGCCATCCTCAAGCTGCTTTCCA 2602 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | |||| | |||||| || || || || ||||| ||||| |||||| ||| Sbjct 2603 GCAAAAATCAACCTTTGCTGGTCAGGGGGGATTCCTTCCTTGTCTTGGATTTTCGCCTTT 2662 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || ||||| |||| | ||| || |||| ||| | ||||| ||||| | || Sbjct 2663 ACATTGTCAACTGTATCGGAGCTCTCAACTTCAAGGGTGATGGTCTTTCCGGTGAGTGTC 2722 Query 139748 TTTACGAATATTTGCAT 139764 || || ||||||||||| Sbjct 2723 TTAACAAATATTTGCAT 2739 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||| | || ||||| || |||||||||||||| || || || || || Sbjct 2302 AACAAGGTGGAGTGTGGACTCCTTCTGAATGTTATAATCTGCCAAAGTCCTGCCATCCTC 2361 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || || ||| | |||| | |||||| || || || || ||||| ||||| Sbjct 2362 AAGCTGCTTTCCGGCAAAAATCAACCTTTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTG 2421 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 |||||| |||| | || | ||| || | | |||||||||| || | ||||| Sbjct 2422 GATTTTCGCCTTTACATTGTCGATTGTATCAGAGCTTTCCACCTCAAGTGTGATGGTCTT 2481 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||| || ||||| ||||||||||| Sbjct 2482 TCCAGTCAGTGTCTTTACAAATATTTGCAT 2511 >seq142724 Length=6502 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 |||||||| || || ||||| || || ||| | || | ||| |||||||| || || Sbjct 3522 GTAGACTCCTTCTGGATGTTGTAGTCAGCT-AGGGTCCGGCCGTCCTCGAGCTGCTTCCC 3580 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 || | || || |||||||| || ||||| |||||||| ||||| ||| || || Sbjct 3581 GGCGAATATGAGGCGTTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 3640 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | || ||||||||||| ||| | ||||| || || | || Sbjct 3641 CACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTTATGGTCTTACCCGTTAGGGT 3700 Query 139747 TTTTACGAATATTTGCAT 139764 ||| ||||| || ||||| Sbjct 3701 TTTCACGAAGATCTGCAT 3718 >seq76562 Length=2025 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | ||||| || ||||||||||| ||||||||||| | |||| || Sbjct 1683 CAAAACAAGGTGAAGTGTGGACTCTTTTTGGATGTTATAATCTGCAAGAGTGCGACCATC 1742 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | ||||| |||||| | |||| | |||||||| ||||| |||||||| ||||| Sbjct 1743 TTCCAATTGTTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCTTCCTTGTC 1802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494759078844800