Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq82795 113 6e-20 seq203223 111 2e-19 seq173968 91.5 2e-13 seq74520 89.7 7e-13 >seq82795 Length=1924 Score = 113 bits (124), Expect = 6e-20 Identities = 224/329 (68%), Gaps = 2/329 (1%) Strand=Plus/Minus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 ||| || |||||||||||||| | |||||||||| |||| || || || || || Sbjct 328 CAAGCACGCGAAATCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGT 269 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAA 50074 | ||| ||||| || || || || || ||||| ||||| || ||| | | || || | Sbjct 268 TAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGA-GCAGAAGCTTCCGGAGA 210 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT 50134 |||| || ||||| || ||| || || | || | || || | | || | | | Sbjct 209 AGAAAATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGT 150 Query 50135 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 ||||| ||||||| | ||| ||||| ||||| || || || || || || | Sbjct 149 CGATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTGCGT 90 Query 50195 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 50254 |||||| |||||| || || ||| || | ||| | || | ||| ||||| |||| Sbjct 89 GAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGTACA 30 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATC 50283 | || || || |||||||||||||| ||| Sbjct 29 TCTCGGAGTGGATGTTTTCAATGGCAATC 1 >seq203223 Length=1923 Score = 111 bits (122), Expect = 2e-19 Identities = 223/328 (68%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 49957 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 50016 || || ||||| |||||||| | |||||||||| |||| || || || || || Sbjct 327 AAGCACGCGAAGTCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTCGAGAAAGTT 268 Query 50017 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAA 50075 | ||| ||||| || || || || || ||||| ||||| || ||| | | || || || Sbjct 267 AATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGA-GCAGAAGCTTCCGGAGAA 209 Query 50076 GAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATG 50135 |||||| ||||| || ||| || || | || | || || | | || | | | Sbjct 208 GAAGATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGTC 149 Query 50136 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| ||||||| | ||| ||||| ||||| || || || || || || | Sbjct 148 GATCCATCGGAGAGCCCACTGGGCTTTCTTCGCCACACAGGGGATGGTATCGATTGCGTG 89 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 |||||| |||||| || || ||| || | ||| | || | ||| ||||| ||||| Sbjct 88 AAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGTACAT 29 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATC 50283 || || || |||||||||||||| ||| Sbjct 28 CTCAGAGTGGATGTTTTCAATGGCAATC 1 >seq173968 Length=7941 Score = 91.5 bits (100), Expect = 2e-13 Identities = 205/306 (67%), Gaps = 8/306 (3%) Strand=Plus/Minus Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319 || || |||||||||||||| ||||||||||| ||||| | |||||||| | ||| Sbjct 7941 GAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGGCGACCTGG 7882 Query 50320 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379 || || | || | | | || | ||||| || ||||||||| || || || Sbjct 7881 ACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAGCGGCGAAG 7822 Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG 50439 || || | | ||| | || || || || |||| | || || || |||| ||||| Sbjct 7821 AAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTGAGGTT-TTCC---CATTG 7766 Query 50440 A----TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTT 50495 | || | ||| | || ||||| || | |||||||| || ||||| ||||| || Sbjct 7765 ACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCCTCGGCCTTCTT 7706 Query 50496 ATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGG 50555 ||||| | ||||| ||| | || || || ||||| ||| || | || ||| || || Sbjct 7705 GTACATTTCCCAGACTTCAGGGTACTGAATCGGGAACATACAGAACCGATCTGGGTTAGG 7646 Query 50556 TGCAAG 50561 || || Sbjct 7645 AGCGAG 7640 >seq74520 Length=9548 Score = 89.7 bits (98), Expect = 7e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | || || ||||| || || ||||| | ||||| || || | Sbjct 4030 GTTCCTGCATTGAAAAGAGTGGGCGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 4089 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | ||||| || || || || | ||| |||||||| || | || | ||| || Sbjct 4090 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 4148 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| ||||| || | ||| | || |||| | ||| || | || | Sbjct 4149 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAGGACCTCTCAAG 4208 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| |||||||| || | || |||||| || || ||||| || Sbjct 4209 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCGGTCATAAATGAT 4256 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | || |||| ||| | || | | ||| |||| ||| || Sbjct 3614 TCCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTAGCATAGGAACAATGCC 3673 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||||||| ||||| || || ||||| ||||| |||||||||| ||| || || Sbjct 3674 ATTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCACGAATGTTATGAACAGA 3733 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || || ||| | || || |||| || ||||| || Sbjct 3734 AACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTTAGAGTGTCATATAT 3793 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 || || || |||||||| ||||| || || || |||||| Sbjct 3794 TCCTTCAATACTATCATCTTTCATGCAAATAAGGAAGCAGCTA 3836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716379358008160