Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq139519 102 8e-17 seq103115 93.3 4e-14 seq106104 91.5 1e-13 seq81063 91.5 1e-13 seq1267 91.5 1e-13 seq3360 89.7 5e-13 seq101777 84.2 2e-11 >seq139519 Length=5451 Score = 102 bits (112), Expect = 8e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || |||||||| || |||||||||||||||||| |||||| || ||||| || || || Sbjct 377 CAAGCAAAATCGCAGTGAAGGCCCTCATCTCTAGAAATAAGCTCATTTGAGAAAGTCAAA 318 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||||||||||| ||||| | |||||| || ||| Sbjct 317 CCTGGCATCAATCCTCTCTTTTTAAGCCAAAAAATGGCA 279 >seq103115 Length=3766 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||| ||||| | |||||||||||||||||| |||||| || ||||| || | || Sbjct 2377 CAAGCACAATCATAGTGAAGGCCCTCATCTCTATAAATAAGCTCATTTGAGAAACTCAAA 2318 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||||||||||| ||||| | |||||| || ||| Sbjct 2317 CCTGGCATCAATCCTCTCTTTTTAAGCCAAAAAATGGCA 2279 >seq106104 Length=3034 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || |||||||| || |||||||| ||||||||| |||||| || ||||| || || || Sbjct 534 CAAGCAAAATCGCAGTGAAGGCCTTCATCTCTAGAAATAAGCTCATTTGAGAAAGTCAAA 475 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATAT 13754 | |||||||||||||| ||||| | |||||| || Sbjct 474 CATGGCATCAATCCTCTCTTTTTAAGCCAAAAAAT 440 >seq81063 Length=1640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| |||||||| || |||||||| ||||||||| |||||| || ||||| || || || Sbjct 394 ACAAGCAAAATCGCAGTGAAGGCCTTCATCTCTAGAAATAAGCTCATTTGAGAAAGTCAA 335 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 | || ||||||||||| ||||| | |||||| || ||| Sbjct 334 ACATGACATCAATCCTCTCTTTTTAAGCCAAAAAATGGCA 295 >seq1267 Length=3547 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || |||||||| || |||| ||||||||||||| |||||| || ||||| || || || Sbjct 414 CAAGCAAAATCGCAGTGAATGCCCTCATCTCTATAAATAAGCTCATTTGAGAAAGTCAAA 355 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATAT 13754 ||| |||||||||||| ||||| | |||||| || Sbjct 354 CCTAGCATCAATCCTCTCTTTTTAAGCCAAAAAAT 320 >seq3360 Length=2824 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || |||||||| || ||||||||||||| | || |||||| || ||||| || || || Sbjct 651 CAAGCAAAATCGCAGTGAAGGCCCTCATATATAGAAATAAGCTCATTTGAGAAAGTCAAA 592 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 ||||||||||||||| ||||| | |||||| || ||| Sbjct 591 CCTGGCATCAATCCTTTCTTTTTAAGCCAAAAAATGGCA 553 >seq101777 Length=1451 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || |||||||| || | |||||||||||||||| |||||| || ||||| || | || Sbjct 362 CAAGCAAAATCGCAGTAAAGGCCCTCATCTCTAGAAATAAGCTCATTTGAGAAAATCAAA 303 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||||||| ||| ||||| |||||| || ||| Sbjct 302 CCTGGCATCAATACTCTCTTTTTAGGCCAAAAAATGGCA 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477329848232160