Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq9834 96.9 3e-15 >seq9834 Length=2319 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || ||||| | | |||||| |||| ||| |||||| || | |||||||| | Sbjct 281 CCACCGCGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCA 222 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | || |||||||| ||||||| || ||| || || | || Sbjct 221 AGAGTTCGCCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGA 162 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGA 43060 | ||||| || || |||| || | |||| || || ||| |||||| ||| | ||| Sbjct 161 ATCCCTTCCTTGTC-CTGAATCTTCGCTTTCACGTTGTCAATGGTGTCGG-AGCTTTCGA 104 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || |||||||| || |||||||||||||| ||||| Sbjct 103 CCTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCAT 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380391468493752