Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1
_202015-09-10] 210,444 sequences; 539,624,286 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq173968 91.5 2e-13
>seq173968
Length=7941
Score = 91.5 bits (100), Expect = 2e-13
Identities = 205/306 (67%), Gaps = 8/306 (3%)
Strand=Plus/Minus
Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGT 42424
|| || |||||||||||||| ||||||||||| ||||| | ||||||| |||||
Sbjct 7941 GAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGGCGACCTGG 7882
Query 42425 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAA 42484
|| || | || | | | || | |||||| || ||||||||| || || ||
Sbjct 7881 ACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAGCGGCGAAG 7822
Query 42485 AACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG 42544
|| || | | ||| | || || | || |||| || || | | | |||| |||||
Sbjct 7821 AAGGCAAGGATATGACTGATGAAGTGCTTCTCGT-CGCTGGTGAGGTTTTCC---CATTG 7766
Query 42545 A----TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600
| || | ||| | || ||||| || | |||||||| || || || ||||| ||
Sbjct 7765 ACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCCTCGGCCTTCTT 7706
Query 42601 ATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGG 42660
||||| | ||||| ||| | || ||||| ||||| ||| || | || ||| || ||
Sbjct 7705 GTACATTTCCCAGACTTCAGGGTACTGAATCGGGAACATACAGAACCGATCTGGGTTAGG 7646
Query 42661 TGCAAG 42666
|| ||
Sbjct 7645 AGCGAG 7640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 669373734777440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |