Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq173968 91.5 2e-13 >seq173968 Length=7941 Score = 91.5 bits (100), Expect = 2e-13 Identities = 205/306 (67%), Gaps = 8/306 (3%) Strand=Plus/Minus Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGT 42424 || || |||||||||||||| ||||||||||| ||||| | ||||||| ||||| Sbjct 7941 GAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGGCGACCTGG 7882 Query 42425 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAA 42484 || || | || | | | || | |||||| || ||||||||| || || || Sbjct 7881 ACCTCCTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAGCGGCGAAG 7822 Query 42485 AACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG 42544 || || | | ||| | || || | || |||| || || | | | |||| ||||| Sbjct 7821 AAGGCAAGGATATGACTGATGAAGTGCTTCTCGT-CGCTGGTGAGGTTTTCC---CATTG 7766 Query 42545 A----TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600 | || | ||| | || ||||| || | |||||||| || || || ||||| || Sbjct 7765 ACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCGGTCCAAAACGACGCCTCGGCCTTCTT 7706 Query 42601 ATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGG 42660 ||||| | ||||| ||| | || ||||| ||||| ||| || | || ||| || || Sbjct 7705 GTACATTTCCCAGACTTCAGGGTACTGAATCGGGAACATACAGAACCGATCTGGGTTAGG 7646 Query 42661 TGCAAG 42666 || || Sbjct 7645 AGCGAG 7640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669373734777440