Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq207794 104 2e-17 seq73220 100 3e-16 seq44755 98.7 1e-15 seq127437 95.1 1e-14 >seq207794 Length=1432 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | ||| | |||| || ||||| ||||| ||||||||||| | Sbjct 889 CCTCCACGAAGGCGAAGAACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGCC 948 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || || |||||||||||| |||| || | ||||||||||| || Sbjct 949 AGAGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCGGGGGGG 1008 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || ||| || | | || | ||||| | | || ||| Sbjct 1009 ATACCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATTGTGTCAGAGCTCTCCACT 1068 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| ||||||| ||| || || ||||||||||| Sbjct 1069 TCAAGAGTGATGGTCTTTCCGGTCAGTGTCTTCACAAATATTTGCAT 1115 >seq73220 Length=12354 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | ||| | |||| ||||||||||| ||||||||||| ||| | Sbjct 6689 CCTCCACGAAGGCGAAGAACAAGGTGAAGCGTAGATTCTTTCTGTATGTTGTAGTCGGCC 6748 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || || ||||| |||||| ||||||| | || || || ||||| Sbjct 6749 AAAGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGTTGGTCAGGAGGA 6808 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||||||| || | | || | ||||| | | || ||| Sbjct 6809 ATGCCTTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACT 6868 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | || || || || || || || || || || |||||| Sbjct 6869 TCAAGAGTGATTGTTTTACCAGTTAAGGTCTTCACAAAAATCTGCATA 6916 >seq44755 Length=3421 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | ||||| |||| || ||||| ||||| ||||||||||| | Sbjct 2057 CCTCCACGAAGGCGAAGAACTAGGTGAAGAGTGGATTCCTTTTGAATGTTGTAATCAGCC 2116 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || || |||||||||||| |||| || | |||||||| || || Sbjct 2117 AGAGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGGG 2176 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || ||| || | | || | ||||| | | || ||| Sbjct 2177 ATACCCTCCTTGTCTTGGATCTTTGCCTTCACATTGTCGATTGTGTCAGAGCTCTCCACT 2236 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || |||| ||| || || ||||||||||| Sbjct 2237 TCAAGAGTGATGGTCTTTCCAGTCAGTGTCTTCACAAATATTTGCAT 2283 >seq127437 Length=6100 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || | ||| | |||| || ||||| ||||||||||||||||| | Sbjct 2014 CCTCCACGAAGGCGAAGAACAAGGTGAAGGGTGGATTCCTTTTGTATGTTGTAATCAGCC 2073 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || || |||||||||||| |||| || | |||||||| || || Sbjct 2074 AGGGTCCTTCCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCTGGGGGG 2133 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || || || | | || | ||||| | | || || Sbjct 2134 ATACCCTCCTTGTCTTGGATCTTCGCCTTCACATTGTCGATTGTGTCAGAGCTCTCCACC 2193 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| ||||||| || ||||| ||||||||||| Sbjct 2194 TCAAGAGTGATGGTCTTCCCGGTCAGCGTCTTTACAAATATTTGCAT 2240 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| ||||||| || || ||||| || ||||||||||| || || | || || Sbjct 2259 AACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCCAAGGTCCGACCATCCTC 2318 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 || |||||||||||| |||| || | ||||| || || || || || || ||||| Sbjct 2319 AAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTG 2378 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 |||||| |||| | || | |||||| | |||||||||| || | || || Sbjct 2379 GATTTTTGCCTTTACATTGTCAATCGTGTCAGAACTCTCTACTTCAAGGGTGATGGTTTT 2438 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | ||| || || || |||||||| Sbjct 2439 TCCAGTGAGTGTCTTAACAAAGATTTGCAT 2468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505680673270080