Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq203223 116 5e-21 seq82795 107 3e-18 >seq203223 Length=1923 Score = 116 bits (128), Expect = 5e-21 Identities = 180/253 (71%), Gaps = 7/253 (3%) Strand=Plus/Plus Query 125322 AAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGG 125381 ||| ||| ||||||| |||||||||| || | || | | | || || || || ||| Sbjct 74 AAAAACAGGCTCTTTCACGCAATCGATACCATCCCCTGTGTGGCGAAGAAAGCCCAGTGG 133 Query 125382 GTGATTCGGTGGATCGATGACGAC-AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGC 125440 | | || |||||||| | | | || ||| | |||| | ||| | |||||||| Sbjct 134 GCTCTCCGATGGATCGACGGCTCCGAAACCTTTG----CCGAACGCCTGCTCGCATTCGC 189 Query 125441 CGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGC 125499 | ||| || ||||||||||| || || || || ||| | || || ||||| ||||| | Sbjct 190 CTGCGTGGAAGGCATCTTCTTCTCCGGAAGCTTCTGC-TCGATATTCTGGCTAAAGAAAC 248 Query 125500 GCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTAC 125559 |||| |||||||| ||| | || | || ||||| || || |||||||||||| ||| Sbjct 249 GCGGTCTCATGCCGGGATTAACTTTCTCGAATGAGTTAATCTCGCGAGACGAGGGCTTAC 308 Query 125560 ACTGTGACTTTGC 125572 |||| ||||| || Sbjct 309 ACTGCGACTTCGC 321 >seq82795 Length=1924 Score = 107 bits (118), Expect = 3e-18 Identities = 178/253 (70%), Gaps = 7/253 (3%) Strand=Plus/Plus Query 125322 AAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGG 125381 ||| ||| ||||||| |||||||||| || | || | | | || || || || ||| Sbjct 74 AAAAACAGGCTCTTTCACGCAATCGATACCATCCCCTGTGTGGCGAAGAAAGCCCAGTGG 133 Query 125382 GTGATTCGGTGGATCGATGACGAC-AAGTCTTCGTACGCCGACAGACTGGTGGCATTCGC 125440 | | || |||||||| | | | || ||| | |||| | ||| | |||||||| Sbjct 134 GCTCTCCGATGGATCGACGGCTCCGAAACCTTTG----CCGAACGCCTGCTCGCATTCGC 189 Query 125441 CGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGC 125499 | ||| || ||||| ||||| || || || || ||| | || || ||||| ||||| | Sbjct 190 CTGCGTGGAAGGCATTTTCTTCTCCGGAAGCTTCTGCT-CGATATTCTGGCTAAAGAAAC 248 Query 125500 GCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTAC 125559 |||| |||||||| ||| | || | || ||||| || || |||||||||||| ||| Sbjct 249 GCGGTCTCATGCCGGGATTAACTTTCTCAAATGAGTTAATCTCGCGAGACGAGGGCTTAC 308 Query 125560 ACTGTGACTTTGC 125572 |||| || || || Sbjct 309 ACTGCGATTTCGC 321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739109806721440