Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq127437 98.7 7e-16 seq9834 96.9 3e-15 seq45179 93.3 3e-14 seq73220 89.7 4e-13 seq121659 87.8 1e-12 seq44755 86.0 5e-12 >seq127437 Length=6100 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 |||||||||| | | ||| |||||||||||||| ||||| || ||||||||||| || Sbjct 2242 CCACCTCTCAGCCGGAGAACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCC 2301 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | || || | ||||| ||||| | || | | || ||||| || Sbjct 2302 AAG-GTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGGG 2360 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||| || ||||| ||||| ||||||| | || || || || | | ||||| Sbjct 2361 GATTCCCTCCTTGTCTTGGATTTTTGCCTTTACATTGTCAATCGTGTCAGAACTCTCTAC 2420 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| |||||||| || || || || || ||||| |||||||| Sbjct 2421 TTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCAT 2468 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | || | || || ||||| ||||| || ||||| |||||| Sbjct 2470 CCACCTCTCAAACGGAGGACCAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCGGCC 2529 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | || | || || | || || ||||| | ||||| | ||| || || || Sbjct 2530 AAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCAGGGGGG 2589 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||||| ||||||| | || || ||||| | || || Sbjct 2590 ATTCCTTCCTTGTCTTGGATTTTCGCCTTTACATTGTCAATCGTATCAGAGCTCTCAACT 2649 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || || || || || ||||| |||||||| Sbjct 2650 TCAAGGGTGATGGTCTTTCCAGTGAGTGTCTTAACAAATATTTGCAT 2696 >seq9834 Length=2319 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || || || ||||||||||| ||| ||| | | || || Sbjct 263 ACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGCCCATCCTCA 204 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| ||| | |||| | || ||||| |||||| ||||| ||||| | Sbjct 203 AGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGGAATCCCTTCCTTGTCCTGA 144 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || || | || ||||| ||| |||| || || | ||| ||||| || Sbjct 143 ATCTTCGCT-TTCACGTTGTCAATGGTGTCGGAGCTTTCGACCTCCAGGGTGATGGTCTT 85 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| |||||||| ||||| Sbjct 84 TCCGGTGAGGGTTTTCACAAAAATCTGCAT 55 >seq45179 Length=1454 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || ||||| || ||||||||||| ||| ||| ||||||| Sbjct 348 ACCAAGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGCCGTCTTCC 407 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | |||| | || ||||| |||||| || || || || Sbjct 408 AGCTGCTTACCTGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCCTGG 467 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || || | || ||||| ||| |||| || |||| ||||| || || Sbjct 468 ATCTTAGCT-TTCACGTTGTCGATGGTGTCGGAGCTTTCGACCTCTAGAGTAATTGTCTT 526 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| |||||||| ||||| Sbjct 527 TCCGGTCAGAGTTTTAACAAAAATCTGCAT 556 >seq73220 Length=12354 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-G 15193 ||||||||||||| | | ||| || |||||||| || || || || |||||||| || | Sbjct 7143 TGCCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCG 7202 Query 15194 CTTAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGT 15251 | ||| || | ||||| | ||||| || || |||| | | || ||||| Sbjct 7203 CC---AATGTCCGACCATCTTCCAGCTGTTTACCCGCAAATATGAGCCTCTGCTGGTCTG 7259 Query 15252 TTGGAATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTT 15310 ||||| || || ||||| ||||| ||| || ||| | || ||||| || | | Sbjct 7260 GGGGAATACCCTCCTTGTCCTGGATTTTAGCT-TTCACATTATCGATGGTGTCTGAACTC 7318 Query 15311 TCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || | |||||| ||||| || || || || || |||||||||||||| Sbjct 7319 TCAACTTCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 7371 >seq121659 Length=2328 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || ||||| || |||||||||||| || ||| | | ||||| | || Sbjct 343 TGAAGAGTTGACTCTTTCTGGATGTTGTAATCGGCAAGGGTTCGCCCATCTTCGAGCTGC 402 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | |||| | || ||||| |||||| || || ||||| || ||| Sbjct 403 TTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGGATCTTG 462 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || || | || || || ||| |||| || || || |||||||| || ||||| Sbjct 463 GCTTTAACGTTGTCGATCGTGTCGGAGCTTTCGACTTCCAAAGTAATGGTCTTTCCTGTA 522 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| || ||||| Sbjct 523 AGAGTCTTCACAAATATCTGCAT 545 >seq44755 Length=3421 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | || | || || ||||| ||||| || ||||| ||||| Sbjct 2741 CCACCTCTCAAACGAAGGACGAGGTGGAGTGTGGACTCTTTCTGAATGTTATAATCTGCC 2800 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | || | || || | || || ||||| | ||||| | ||| ||||| || Sbjct 2801 AAAGTCCTGCCATCCTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCAGGGGGG 2860 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||||| ||| ||| | || |||||||| | |||| || Sbjct 2861 ATACCTTCCTTGTCTTGGATTTTCGCCTTAACATTGTCAATGGTATCAGAACTTTCCACT 2920 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| || || || || || || ||||| ||||| || ||||| Sbjct 2921 TCAAGGGTTATAGTCTTCCCAGTAAGGGTTTTAACAAAGATCTGCAT 2967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361250287767804