Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq73220 104 2e-17 seq45179 91.5 1e-13 seq207794 86.0 5e-12 seq127437 86.0 5e-12 seq44755 82.4 6e-11 >seq73220 Length=12354 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | |||| ||| | ||||||||||| || || ||||| |||||| Sbjct 7145 CCACCTCTCAAACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCC 7204 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | || |||||||||||||||||| | || || |||||||| || ||| Sbjct 7205 AATGTCCGACCATCTTCCAGCTGTTTACCCGCAAATATGAGCCTCTGCTGGTCTGGGGGA 7264 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| ||||| ||||| ||| || | ||| || || | ||| | Sbjct 7265 ATACCCTCCTTGTCCTGGATTTTAGCTTTCACATTATCGATGGTGTCTGAACTCTCAACT 7324 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||||| ||||| || || | || || |||||||||||||| Sbjct 7325 TCAAGGGTAATAGTTTTTCCAGTGAGGGTCTTCACAAAAATTTGCAT 7371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || |||||||| || || || ||||| |||| ||| | | |||||| Sbjct 7619 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAATCAGCCAATGTCCGGCCATCCTCC 7678 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| ||||| ||| | ||||| |||||||| || || | ||||| ||||| Sbjct 7679 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTGG 7738 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | | ||||| | ||| ||| | || ||||| || Sbjct 7739 ATCTTTGCCTTCACATTGTCAATTGTATCTGAACTCTCAACTTCAAGTGTGATGGTCTTT 7798 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || |||| ||||||||||| ||||||||| Sbjct 7799 CCAGTTAGCGTTTTGACAAATATTTGCATT 7828 >seq45179 Length=1454 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || ||||| || ||||| ||||||||||| | ||| | |||| || Sbjct 347 CACCAAGTGGAGGGTTGACTCTTTCTGAATGTTGTAATCCGCGAGAGTTCGGCCGTCTTC 406 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| || |||| || |||||||| ||| || | |||||| || || Sbjct 407 CAGCTGCTTACCTGCGAAAATCAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTATCCTG 466 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTT 19010 || || ||| || | | ||| || ||| || | || || | ||||| || | Sbjct 467 GATCTTAGCTTTCACGTTGTCGATGGTGTCG-GAGCTTTCGACCTCTAGAGTAATTGTCT 525 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 | || || | |||||| |||||||| |||||| Sbjct 526 TTCCGGTCAGAGTTTTAACAAAAATCTGCATT 557 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | |||||| || |||||||| || || ||||| || |||| |||| |||| || Sbjct 1031 CACTAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTTCGACCGTCTTC 1090 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||||| || || | || || |||||||||||| || | |||||||||||| Sbjct 1091 AAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGATCCGGTGGGATGCCCTCTTTGTCTTG 1150 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | ||| || ||| ||| || | ||| ||||| || Sbjct 1151 GATCTTGGCCTTGACATTATCGATCGTGTCGGAGCTCTCAACCTCTAGGGTTATGGTCTT 1210 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | |||||| ||||| || ||||| Sbjct 1211 TCCGGTAAGAGTTTTAACAAAGATCTGCAT 1240 >seq207794 Length=1432 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || || ||||||||||| |||||||| |||| || | | ||||| Sbjct 907 ACCAGGTGAAGGGTGGATTCCTTTTGAATGTTGTAATCAGCCAGAGTCCTTCCATCCTCA 966 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||||||||| ||| | || || ||||||||||| ||| | ||||| ||||| Sbjct 967 AGCTGTTTACCAGCAAAGATGAGCCTCTGCTGATCGGGGGGGATACCCTCCTTGTCCTGG 1026 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | ||| || || |||| ||| | || ||||| || Sbjct 1027 ATCTTTGCCTTCACATTGTCGATTGTGTCAGAGCTCTCCACTTCAAGAGTGATGGTCTTT 1086 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || || | || || ||||| ||||||||| Sbjct 1087 CCGGTCAGTGTCTTCACAAATATTTGCATT 1116 >seq127437 Length=6100 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || || | |||| || | || ||||| || ||||| |||||||| | Sbjct 2240 TTCCACCTCTCAGCCGGAGAACCAAATGAAGGGTGGACTCTTTCTGAATGTTGTAATCTG 2299 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | ||||| ||||||||||| ||| | || || |||||||| || || Sbjct 2300 CCAAGGTCCGACCATCCTCAAGCTGTTTACCAGCAAAGATGAGCCTCTGCTGGTCTGGGG 2359 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| ||||| ||||| | | | | || || | ||| Sbjct 2360 GGATTCCCTCCTTGTCTTGGATTTTTGCCTTTACATTGTCAATCGTGTCAGAACTCTCTA 2419 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | ||| |||||||| || || | || || ||||| ||||||||| Sbjct 2420 CTTCAAGGGTGATGGTTTTTCCAGTGAGTGTCTTAACAAAGATTTGCATT 2469 >seq44755 Length=3421 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||||||||| |||||||| |||| || | | ||||| ||||||||||| Sbjct 2087 GTGGATTCCTTTTGAATGTTGTAATCAGCCAGAGTCCTTCCATCCTCAAGCTGTTTACCA 2146 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || || ||||||||||| ||| | ||||| ||||| || || || Sbjct 2147 GCAAAGATGAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCTTGGATCTTTGCCTTC 2206 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| || || |||| ||| | || ||||| || || || | || Sbjct 2207 ACATTGTCGATTGTGTCAGAGCTCTCCACTTCAAGAGTGATGGTCTTTCCAGTCAGTGTC 2266 Query 19025 TTGACAAAAATTTGCATT 19042 || ||||| ||||||||| Sbjct 2267 TTCACAAATATTTGCATT 2284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413509509382936