Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq9834 118 9e-22 seq127437 93.3 4e-14 seq84576 93.3 4e-14 seq73220 93.3 4e-14 seq2835 93.3 4e-14 seq76175 89.7 4e-13 seq44755 89.7 4e-13 seq207794 87.8 2e-12 seq45179 84.2 2e-11 >seq9834 Length=2319 Score = 118 bits (130), Expect = 9e-22 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| || || || ||| |||||| ||||||||||||||||| Sbjct 282 ACCACCGCGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGC 223 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | |||| | ||||| |||||||| ||| || |||| | | |||||| || || Sbjct 222 AAGAGTTCGCCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGTCTCTGCTGGTCTGGTGG 163 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677 | | |||||||||| ||| ||| |||| | | | ||||| |||| || | || Sbjct 162 AATCCCTTCCTTGTCCTGAATCTTC-GCTTTCACGTTGTCAATGGTGTCGG-AGCTTTCG 105 Query 48678 -TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || ||||| || |||||||| ||||||||||||||||||||| Sbjct 104 ACCTCCAGGGTGATGGTCTTTCCGGTGAGGGTTTTCACAAAAATCTGCATC 54 >seq127437 Length=6100 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| ||| |||||| |||||||||||||||| ||| ||| || | ||||| Sbjct 1804 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAG-CAAGTGTCCGACCATCCTC 1862 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || | | || | | ||||||||| || | | ||||||||| Sbjct 1863 CAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCTG 1922 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| ||| | | ||||||| || | |||| ||| | ||| || || || Sbjct 1923 AATTTTGGCCTTCACATTATCTATGGTGTCTGAGCTCTCCACCTCTAGTGTGATCGTCTT 1982 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || |||||||| |||||||| Sbjct 1983 TCCCGTCAGGGTCTTCACAAATATCTGCAT 2012 >seq84576 Length=1122 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| ||| |||||| |||||||||||||||| ||| ||| || | ||||| Sbjct 803 ACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAG-CAAGTGTCCGACCATCCTC 861 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || | | || | | ||||||||| || | | ||||||||| Sbjct 862 CAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGAGGGATCCCCTCCTTGTCCTG 921 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| ||| | | ||||||| || | |||| ||| | ||| || || || Sbjct 922 AATTTTGGCCTTCACATTATCTATGGTGTCTGAGCTCTCCACCTCTAGTGTGATCGTCTT 981 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || |||||||| |||||||| Sbjct 982 TCCTGTCAGGGTCTTCACAAATATCTGCAT 1011 >seq73220 Length=12354 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||||||||| ||||| ||||| |||||||| ||||| ||| | ||||| ||||| Sbjct 6484 ATGAAGTGTAGATTCCTTCTGAATATTGTAATCTGCCAAGGTCCGCCCATCCTCTAGCTG 6543 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | | ||||||||| || | || |||||||| ||| || Sbjct 6544 CTTTCCAGCAAATATGAGCCTCTGCTGATCTGGAGGGATACCCTCCTTGTCTTGAATCTT 6603 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | ||||||| || | |||| ||| | ||| || |||||||| || Sbjct 6604 TGCCTTCACATTATCTATGGTGTCAGAGCTCTCCACCTCAAGTGTGATCGTTTTACCTGT 6663 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||||||||||||||| Sbjct 6664 CAGGGTCTTCACAAAAATCTGCAT 6687 >seq2835 Length=4848 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | ||| ||||||||||||| || || || | Sbjct 775 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCAGCGAA 716 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| ||| || | | |||||||||| || || ||||| | Sbjct 715 GATGAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 656 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | || || ||| | |||||||| || || || || |||||||| Sbjct 655 GTCGATGGTGTCAGATGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCAC 596 Query 48715 AAAAATCTGCATCGTGTCT 48733 ||| ||||||||| || || Sbjct 595 AAAGATCTGCATCTTGGCT 577 >seq76175 Length=8586 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | ||| ||||||||||||| || || || | Sbjct 2448 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCAGCGAA 2389 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| ||| || | | |||||||||| || || ||||| | Sbjct 2388 GATAAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 2329 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | || || ||| | |||||||| || || || || |||||||| Sbjct 2328 GTCGATGGTGTCAGACGATTCAACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCAC 2269 Query 48715 AAAAATCTGCATCGTGTCT 48733 || ||||||||| || || Sbjct 2268 GAAGATCTGCATCTTGGCT 2250 >seq44755 Length=3421 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| || |||||| |||||||||||||||| ||| || || | ||||| Sbjct 1847 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAG-CAAGAGTCCGACCATCCTC 1905 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || | | || | | ||||||||| || | | |||||||||| Sbjct 1906 CAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTG 1965 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| ||| | | ||||||| || | |||| ||| | ||| || || || Sbjct 1966 AATTTTTGCCTTCACATTATCTATGGTGTCTGAGCTCTCCACCTCTAGTGTAATCGTCTT 2025 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || || |||||||| ||||||||| Sbjct 2026 TCCTGTCAGGGTCTTCACAAATATCTGCATC 2056 >seq207794 Length=1432 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| || |||||| |||||||||||||||| ||| || || | ||||| Sbjct 679 ACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAG-CAAGAGTCCGACCATCCTC 737 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || | | || | | ||||||||| || | | |||||||||| Sbjct 738 CAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCTGGAGGGATCCCTTCCTTGTCCTG 797 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| ||| | | ||||||| || | |||| ||| | ||| || || || Sbjct 798 AATTTTTGCCTTCACATTATCTATGGTGTCTGAGCTCTCCACCTCTAGTGTAATCGTCTT 857 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || |||||||| |||||||| Sbjct 858 TCCCGTCAGGGTCTTCACAAATATCTGCAT 887 >seq45179 Length=1454 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| || |||||||| || |||| | | | || |||||||| Sbjct 125 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCAGCTG 184 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || || | |||||||||| || | | |||||||||| ||| || Sbjct 185 CTTCCCAGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGAATCTT 244 Query 48643 CTGC-TTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| || | | | ||||| |||| | |||| ||| | || ||||| || || | Sbjct 245 -TGCTTTCACATTATCAATGGTGTCGGAACTCTCCACCTCCAGCGTGATGGTCTTCCCAG 303 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| ||||| || || ||||| Sbjct 304 TCAGAGTCTTCACGAAGATTTGCAT 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420170780714444