Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq121781 116 2e-21 seq38237 113 2e-20 seq196355 107 1e-18 seq161807 107 1e-18 seq104291 107 1e-18 seq64063 107 1e-18 seq61324 107 1e-18 seq189330 105 3e-18 seq187416 105 3e-18 seq140976 105 3e-18 seq82747 105 3e-18 seq82746 105 3e-18 seq44099 105 3e-18 seq33957 105 3e-18 seq157518 104 1e-17 seq143574 100 1e-16 seq143573 100 1e-16 seq194112 95.1 6e-15 seq109670 95.1 6e-15 seq130152 82.4 4e-11 seq97663 82.4 4e-11 >seq121781 Length=1728 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATC-AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||||||| ||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 1728 AAAAAAAAATCCAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 1669 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 1668 CGACGCTCTAACCAACTGAGCTAATAGGCC 1639 >seq38237 Length=2420 Score = 113 bits (124), Expect = 2e-20 Identities = 81/93 (87%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||| |||| || ||||||||||| | | |||||||| ||||||||||||||||| Sbjct 2395 AATTAA-AAAATATTTTATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 2337 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 2336 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 2304 >seq196355 Length=7085 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1421 AACTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1362 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1361 CAACTGAGCTAATAGGCC 1344 >seq161807 Length=5823 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 3571 AAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 3512 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 3511 CAACTGAGCTAATAGGCC 3494 >seq104291 Length=1913 Score = 107 bits (118), Expect = 1e-18 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| || |||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 1766 ATAAAATATTTTTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 1707 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 1706 ACGCTCTAACCAACTGAGCTAATAGGCC 1679 >seq64063 Length=3076 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 2976 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 3035 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 3036 CAACTGAGCTAATAGGCC 3053 >seq61324 Length=3595 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1416 AACTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1357 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1356 CAACTGAGCTAATAGGCC 1339 >seq189330 Length=1082 Score = 105 bits (116), Expect = 3e-18 Identities = 78/92 (85%), Gaps = 5/92 (5%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTG-----GCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||||| ||| || ||||||| | | |||||||| |||||||||||||||||| Sbjct 70 TAAAAAATGAAAATGCTATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 129 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| ||||||||||||||| |||| Sbjct 130 CACGACGCTCTAACCAACTGAGCTAATAGGCC 161 >seq187416 Length=5028 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 2708 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 2767 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 2768 CTGAGCTAATAGGCC 2782 >seq140976 Length=1258 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 228 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 287 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 288 CTGAGCTAATAGGCC 302 >seq82747 Length=2205 Score = 105 bits (116), Expect = 3e-18 Identities = 84/99 (85%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 11431 ATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 || ||||| ||||||| || || |||||||| | | |||||||| ||||||||||| Sbjct 710 ATGTAGAAA-AATAAAATATATCAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG 767 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| ||||||||||||||| |||| Sbjct 768 TTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 806 >seq82746 Length=2383 Score = 105 bits (116), Expect = 3e-18 Identities = 84/99 (85%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 11431 ATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 || ||||| ||||||| || || |||||||| | | |||||||| ||||||||||| Sbjct 729 ATGTAGAAA-AATAAAATATATCAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG 786 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| ||||||||||||||| |||| Sbjct 787 TTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 825 >seq44099 Length=4387 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 244 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 303 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 304 CTGAGCTAATAGGCC 318 >seq33957 Length=3322 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 462 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 403 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 402 CTGAGCTAATAGGCC 388 >seq157518 Length=1006 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 919 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 860 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 859 TGAGCTAATAGGCC 846 >seq143574 Length=1895 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1009 TGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 950 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 949 TGAGCTAATAGGCC 936 >seq143573 Length=1928 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1013 TGGCCTATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 954 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 953 TGAGCTAATAGGCC 940 >seq194112 Length=6977 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 290 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 349 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 350 TGAGCTAATAGGCC 363 >seq109670 Length=6971 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||||| Sbjct 307 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 248 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 247 TGAGCTAATAGGCC 234 >seq130152 Length=28560 Score = 82.4 bits (90), Expect = 4e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| |||||| | |||||||||| || ||||| |||||| Sbjct 1157 TGGCCCATGTAGGTCTCGAACCTATGACCTTTGTGTTATTAGCATGATGCTCTAACCAAC 1216 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1217 TGAGCTAATAGGCC 1230 >seq97663 Length=13389 Score = 82.4 bits (90), Expect = 4e-11 Identities = 80/102 (78%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 11432 TATAGAATTAATAAAAAATCA-AATT---GGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||||||| || ||| || | |||| ||| |||| ||| || ||||||| || ||| Sbjct 2122 TATAGAATAAAAAAATGATTATAATTTATGGCACATGCAAGTCTCAAACCTTCAACATTC 2181 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||| ||||| ||||||||||||||| |||| Sbjct 2182 ACGTTATTAGTGCGATGCTCTAACCAACTGAGCTAATAGGCC 2223 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260820530965744