Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq108185 138 2e-28 seq84988 138 2e-28 seq108186 134 2e-27 seq50317 132 8e-27 seq144989 131 3e-26 seq61713 111 2e-20 seq201605 107 3e-19 seq194203 105 1e-18 seq206465 100 4e-17 seq135167 100 4e-17 seq60273 96.9 5e-16 >seq108185 Length=12707 Score = 138 bits (152), Expect = 2e-28 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | ||| || |||||||| || || ||||| ||||| || ||| Sbjct 1378 GCAAAGCGTCATCGGAAAGTTCTCCGTGATAACATTCAGGGCATCACGAAGCCGGCGATC 1437 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||| | | ||||| || ||| | || ||| ||| |||| || |||| Sbjct 1438 CGGCGTCTGGCTAGAAGAGGTGGGGTGAAGAGAATCAGTGGGTTGATCTACGAGGAGACC 1497 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| ||||||||||| | ||| ||| |||| ||||||| | || || ||| Sbjct 1498 AGAGGCGTTCTGAAGATCTTCTTGGAGAACGTCATCCGTGATGCTGTGACTTACACTGAG 1557 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||||| || ||||| || ||| |||||||| | || || || Sbjct 1558 CACGCTAGGCGGAAGACGGTGACCGCCATGGATGTGGTTTACGC 1601 Score = 134 bits (148), Expect = 2e-27 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | ||| || |||||||| || |||||||| ||||| |||||| Sbjct 6208 GCGAAGCGTCATCGGAAAGTTCTCCGTGATAACATTCAGGGAATCACTAAGCCGGCTATC 6267 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | |||||||| ||| | || || ||| |||| || |||| Sbjct 6268 CGGCGTCTTGCGAGAAGAGGTGGAGTGAAGAGAATCAGCGGGTTGATCTACGAGGAGACC 6327 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||||||||||||||| | ||| |||||| | |||||| | || || ||| Sbjct 6328 AGAGGCGTTTTGAAGATCTTCTTGGAGAACGTTATTCGCGATGCTGTGACGTACACTGAG 6387 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||| | || ||||| || ||| |||||||| | || || || Sbjct 6388 CACGCCAGGCGGAAGACGGTGACCGCCATGGATGTTGTTTACGC 6431 >seq84988 Length=7535 Score = 138 bits (152), Expect = 2e-28 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | ||| || |||||||| || |||||||| ||||| |||||| Sbjct 529 GCGAAGCGTCATCGGAAAGTTCTCCGTGATAACATTCAGGGAATCACTAAGCCGGCTATC 588 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | | |||||||| ||| | || ||| ||| |||| || |||| Sbjct 589 CGGCGTCTTGCGAGAAGAGGTGGAGTGAAGAGAATCAGTGGGTTGATCTACGAGGAGACC 648 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||||||||||||||| | ||| |||||| | |||||| | || || ||| Sbjct 649 AGAGGCGTTTTGAAGATCTTCTTGGAGAACGTTATTCGCGATGCTGTGACGTACACTGAG 708 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||| | || ||||| || ||| |||||||| | || || || Sbjct 709 CACGCCAGGCGGAAGACGGTGACCGCCATGGATGTTGTTTACGC 752 >seq108186 Length=4723 Score = 134 bits (148), Expect = 2e-27 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | ||| || |||||||| || || ||||| ||||| || ||| Sbjct 2893 GCAAAGCGTCATCGGAAAGTTCTCCGTGATAACATTCAGGGCATCACGAAGCCGGCGATC 2952 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||| | | ||||| || ||| | || ||| ||| |||| || |||| Sbjct 2953 CGGCGTCTGGCTAGAAGAGGTGGGGTGAAGAGAATCAGTGGGTTGATCTACGAGGAGACC 3012 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| ||||||||||| | ||| ||| || | |||||| | ||||| ||| Sbjct 3013 AGAGGCGTTCTGAAGATCTTCTTGGAGAACGTCATTCGCGATGCTGTGACTTATACTGAG 3072 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||||| || ||||| || ||| |||||||| | || || || Sbjct 3073 CACGCTAGGCGGAAGACGGTGACCGCCATGGATGTGGTTTACGC 3116 >seq50317 Length=8155 Score = 132 bits (146), Expect = 8e-27 Identities = 177/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| |||||||| |||||||| || ||| | |||||| | | || Sbjct 6566 CTCCGTGATAACATCCAGGGAATCACGAAGCCAGCCATACGTAGGCTGGCTAGGAGAGGA 6625 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || || || ||||||| |||| |||| ||| ||||||||||| Sbjct 6626 GGTGTGAAGCGTATCAGCGGTCTGATCTATGAGGAGACCCGTGGTGTGCTGAAGATCTTC 6685 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| || | || || || ||| || ||||||||| || ||||| || Sbjct 6686 TTGGAGAACGTCATTCGCGACGCCGTCACCTACACGGAGCACGCTCGCCGGAAGACCGTG 6745 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| |||||||||| | || | || ||| | | | ||||| ||||| Sbjct 6746 ACTGCCATGGACGTCGTCTATGCTCTCAAGAGGCAGGGCAGGACTCTGTATGGGTTTGGT 6805 Query 16694 AGTTAA 16699 ||||| Sbjct 6806 GGTTAA 6811 >seq144989 Length=2593 Score = 131 bits (144), Expect = 3e-26 Identities = 189/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | || || ||||||||||| || ||||| |||||||| || Sbjct 2113 GCAAAGCGACATCGTAAGGTGCTCCGTGATAACATCCAGGGTATCACGAAGCCAGCCATA 2054 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||| | |||||| | | || || || |||||| || || || ||||||| |||| Sbjct 2053 CGTAGGCTGGCTAGGAGAGGAGGTGTGAAGCGTATCAGCGGTCTGATCTATGAGGAGACC 1994 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||||||||| | ||| ||| || | || || || ||| || ||| Sbjct 1993 CGTGGTGTGCTGAAGATCTTCTTGGAGAACGTCATTCGGGACGCCGTCACCTACACGGAG 1934 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| || || ||||||| |||||||||| | || | || ||| Sbjct 1933 CACGCTCGCCGGAAGACCGTGACTGCCATGGACGTCGTCTATGCTCTCAAGAGGCAGGGC 1874 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||| ||||| ||||| Sbjct 1873 AGGACTCTGTATGGGTTTGGTGGTTAA 1847 >seq61713 Length=5655 Score = 111 bits (122), Expect = 2e-20 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||| || || || || ||||||||||| || ||||||||||| || || Sbjct 3919 GCTAAGCGTCATCGCAAGGTC-CTCCGTGATAACATCCAGGGCATCACCAAGCCTGCCAT 3977 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||| | | || || || |||||| || || || |||| ||||| | Sbjct 3978 CAGGCGTCTGGCCAGAAGAGGAGGCGTGAAGCGTATCAGCGGTCTGATCTACGAAGAAAC 4037 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | ||||||||||| ||| ||||||| || ||| | ||| || || Sbjct 4038 CAGAGGGGTGCTCAAGATCTTCCTTGAGAACGTTATCAGAGACGCTGTGACCTACACTGA 4097 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 ||||||| || ||||| || || | ||||| Sbjct 4098 GCACGCTCGTCGCAAGACCGTGACGGCTATGGA 4130 >seq201605 Length=3761 Score = 107 bits (118), Expect = 3e-19 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||||||||||| | || || || ||||||||||| || ||||||||||| || || Sbjct 1282 GCCAAGCGTCATCGCAAGGTC-CTCCGTGATAACATCCAGGGCATCACCAAGCCTGCCAT 1224 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||| | | || || || |||||| || || || |||| ||||| | Sbjct 1223 CAGGCGTCTGGCCAGAAGAGGAGGCGTGAAGCGTATCAGCGGTCTGATCTACGAAGAAAC 1164 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | ||||||||||| ||| ||||||| || ||| | ||| || || Sbjct 1163 CAGAGGGGTGCTCAAGATCTTCCTTGAGAACGTTATCAGAGACGCTGTGACCTACACTGA 1104 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 ||||||| || ||||| || || | ||||| Sbjct 1103 GCACGCTCGTCGCAAGACCGTGACGGCTATGGA 1071 >seq194203 Length=5817 Score = 105 bits (116), Expect = 1e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||||||||| || || ||||||||||| ||||| |||||| |||| | | || Sbjct 3429 CTCCGAGATAACATTCAGGGTATCACCAAGCCTGCTATTCGTCGTTTGGCGAGGAGAGGA 3370 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || || | | ||||| |||| | | ||| | ||||| ||| Sbjct 3369 GGCGTGAAGAGGATCAGCGGTCTCATTTATGAGGAGACCAGAGGCGTTCTCAAGATTTTC 3310 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| || | |||||| | ||| || |||||||| | | | |||||||| Sbjct 3309 CTCGAGAACGTGATTCGCGATGCTGTGACCTACACTGAGCACGCCAGAAGGAAGACTGTG 3250 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| | |||||| | || ||||| Sbjct 3249 ACCGCTATGGATGTTGTTTATGC 3227 >seq206465 Length=5421 Score = 100 bits (110), Expect = 4e-17 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||| || || ||||||||||| ||||| |||||| |||| | | || Sbjct 3483 CTCCGGGATAACATTCAGGGTATCACCAAGCCTGCTATTCGTCGTTTGGCGAGGAGAGGA 3424 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||| | || || | | ||||| |||| | | ||| | ||||| ||| Sbjct 3423 GGCGTGAAGAGGATCAGCGGTCTCATTTATGAGGAGACCAGAGGCGTTCTCAAGATTTTC 3364 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| || | |||||| | ||| || |||||||| | | | |||||||| Sbjct 3363 CTCGAGAACGTGATTCGCGATGCTGTGACCTACACTGAGCACGCCAGAAGGAAGACTGTG 3304 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| | |||||| | || ||||| Sbjct 3303 ACCGCTATGGATGTTGTTTATGC 3281 >seq135167 Length=9503 Score = 100 bits (110), Expect = 4e-17 Identities = 168/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || || ||||||||||| || || || || || || | | ||||| | Sbjct 767 GAGATAACATTCAGGGTATCACCAAGCCTGCCATTCGCCGGCTTGCGAGAAGAGGTGGTG 708 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || ||| || ||||||| || | | | ||| | ||||||||||| Sbjct 707 TGAAGAGGATCAGTGGGCTGATCTATGAGGAAACCAGAGGGGTTCTTAAGATCTTCCTTG 648 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||||| | ||| || || || || | | | ||||| |||||| Sbjct 647 AGAATGTGATTCGCGATGCTGTGACCTACACTGAACATGCGAGAAGGAAGACCGTCACCG 588 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| | || | || || | | ||||||| ||||| ||| Sbjct 587 CCATGGATGTGGTTTATGCTCTCAAGAGGCAGGGAAGGACCCTTTATGGATTTGGCGGTT 528 Query 16698 AAT 16700 ||| Sbjct 527 AAT 525 >seq60273 Length=5331 Score = 96.9 bits (106), Expect = 5e-16 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || || ||||||||||| || || || || || || | | ||||| | Sbjct 3534 GAGATAACATTCAGGGTATCACCAAGCCTGCCATTCGCCGGCTTGCGAGAAGAGGTGGTG 3593 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || ||| || ||||||| || | | | ||| | ||||||||||| Sbjct 3594 TGAAGAGGATCAGTGGGCTGATCTATGAGGAAACCAGAGGGGTTCTTAAGATCTTCCTTG 3653 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||||| | ||| || || || || | | | ||||| |||||| Sbjct 3654 AGAATGTGATTCGCGATGCCGTGACCTACACTGAACATGCGAGAAGGAAGACGGTCACCG 3713 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| | || | || || | | ||||||| ||||| ||| Sbjct 3714 CCATGGATGTGGTTTATGCTCTCAAGAGGCAGGGAAGGACCCTTTATGGATTTGGCGGTT 3773 Query 16698 AAT 16700 ||| Sbjct 3774 AAT 3776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78882789577692