Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20cinerea_20x_20Vitis_20riparia_20[genbank_20GCA_5F001282645.1 _202015-09-10] 210,444 sequences; 539,624,286 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq43099 168 8e-37 seq159223 125 9e-24 seq6114 122 1e-22 seq203825 102 1e-16 seq161624 102 1e-16 seq129087 91.5 2e-13 seq18711 91.5 2e-13 >seq43099 Length=3685 Score = 168 bits (186), Expect = 8e-37 Identities = 257/366 (70%), Gaps = 0/366 (0%) Strand=Plus/Minus Query 138491 TGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAAC 138550 ||||||||| || ||||||| ||| || ||| | || ||| || | ||||| Sbjct 2302 TGAAGATGGTGATGGTGCAAATACATTTCGGGCTTTTAATCCAACTTAAACTAAGGAAAC 2243 Query 138551 CTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAA 138610 ||||||||||| | |||||||||| | || |||||||| | ||| |||| || Sbjct 2242 TTATTCAATGGTAATCGCTAACCGTTTTTTATCCTAAATCTTTAGGGTTGTTTTTTCCAA 2183 Query 138611 TAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAG 138670 ||| ||||| | || |||||| || | || || || | | | | |||| ||| Sbjct 2182 TAAATGTTGGTTACATTTCTTTGTGTTATTGGTACCAATAACCAATTTATGGATGAGTGC 2123 Query 138671 TATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAAT 138730 | |||| | ||||||| ||||| ||| |||| | ||| | ||||| || |||||||| Sbjct 2122 TCTTGGAGTAGTTGGTCTAGCTCTAAACTTACGTGTCTATAACTTCGTTTCCCAAGAAAT 2063 Query 138731 TCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGA 138790 | || || |||||||||||||| |||| ||||||||||| || ||||| | ||||| Sbjct 2062 CCATGTAGTGGAAGATCCTGAATTTGAGATTTTCTACACCAAAAATATTCTCTTAAATGA 2003 Query 138791 AGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGA 138850 |||| | | | | |||||||| | ||||| ||| | |||||| || | || |||| Sbjct 2002 AGGTATTCATACTTGGATGGCAATTCAAGATCAGCCTTATGAAAACCTTATATTCTCTGA 1943 Query 138851 AGAAGT 138856 || || Sbjct 1942 GGAGGT 1937 >seq159223 Length=5599 Score = 125 bits (138), Expect = 9e-24 Identities = 269/397 (68%), Gaps = 14/397 (4%) Strand=Plus/Minus Query 138398 CCTC-AACCCC--TTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTG 138454 |||| |||||| |||||||||||||| || | | | || || | | ||| | Sbjct 3453 CCTCGAACCCCCATTTCATATGATGGGAGTTGTCAATGTACTAGGCACTAATTTGCCGTA 3394 Query 138455 TGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAAT-- 138512 ||||||||||||||| ||||||||||| |||| ||||||||| || ||||| Sbjct 3393 CTCTATTCATGGTGCTATAGTAGAAAATAAGTTGTTTGAAGATGGTGATGGTGCAAATTC 3334 Query 138513 ------ACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACT 138566 |||||||| ||| | || ||||| |||||||| |||||||| ||| Sbjct 3333 ATTCTAGCTTTTAAA-TTTTTAATCCAACTCATAGTGAAGAAACTTATTCAATAGTTTTC 3275 Query 138567 GCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAAT-AAGCGTTGGCTTCA 138625 |||||||| |||| |||||||| | ||||||||| ||| || |||||| | | Sbjct 3274 ATTAACCGTTTTTGGTTCCAAATCTTCAGGATTGCTTTTTCCAATAAATCGTTGGTTATA 3215 Query 138626 CTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGG 138685 || |||||| | ||||| || | | | | | |||| ||| | |||| | ||| Sbjct 3214 TTTTTTTATGTTGTTTGTACCAGCAACCGATTTATGGATGAGTGCTCTTGGGGTAGTTGA 3155 Query 138686 TCTTGCTCTTAACCTACGAGCGTATGA-TTTCGTATCGCAAGAAATTCGTGCAGCAGAAG 138744 ||| |||| || ||| || ||||| ||| | | ||||||| || |||| ||| Sbjct 3154 TCTATCTCTAAAATTACATGCCTATGACTTTATTTTTCAAAGAAATCTGTATAGCAAAAG 3095 Query 138745 ATCCTGAATTCGAGACCTTCTACACCAAGAACATTCT 138781 || | ||| ||||| || |||| ||| || |||| Sbjct 3094 ATTGTAAATATGAGACTTTTTACATCAAAAATCTTCT 3058 >seq6114 Length=3795 Score = 122 bits (134), Expect = 1e-22 Identities = 221/323 (68%), Gaps = 8/323 (2%) Strand=Plus/Minus Query 138479 AAATACTTTGTATGAAGATGGCGAACAATCAAATAC-------TTTTAAAGCATTTGAAC 138531 ||||| |||| ||||||||| || ||||| | |||| || ||| | | Sbjct 2018 AAATAAGTTGTTTGAAGATGGTGATGGTGCAAATCCATTCTAGTTTTTAAATTTTTAATC 1959 Query 138532 CTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCT 138591 | || ||| |||||||| |||||||||||| ||| | || |||| ||||||| Sbjct 1958 CAACACAAATTGAAGAAACTTATTCAATGGTTTTCATTAATCATTTTTGGTTCCAAATCT 1899 Query 138592 TTGGAATTGCTTTTAGTAAT-AAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCGTC 138650 |||| |||||||| ||| || |||||| | | || |||||| | ||||| || || Sbjct 1898 TTGGGGTTGCTTTTTCCAATAAATCGTTGGTTATATTTTTTTATGTTGTTTGTACCAGTA 1839 Query 138651 ATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGTAT 138710 | | | | |||| ||| | | | | | || |||| ||| ||| || ||| Sbjct 1838 ACCGATTTATGGATGAGTGCCCCTAGGGTAGTCGATCCATCTCTAAACTTACATGCCTAT 1779 Query 138711 GATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACACC 138770 || || || | ||||||||| || || || |||||||| |||| ||||| ||||||| | Sbjct 1778 GACTTTGTTTTCCAAGAAATTTGTACATCAAAAGATCCTAAATTTGAGACTTTCTACATC 1719 Query 138771 AAGAACATTCTTCTGAATGAAGG 138793 || |||||||| | || ||||| Sbjct 1718 AAAAACATTCTCTTAAAAGAAGG 1696 >seq203825 Length=6240 Score = 102 bits (112), Expect = 1e-16 Identities = 270/402 (67%), Gaps = 13/402 (3%) Strand=Plus/Minus Query 138246 AACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCT 138305 || |||||| || ||| || | | || ||| | || || || || | || |||| Sbjct 2267 AATGCAATCACACTCTTTGTTTCAATTGCTATTTTTGTTTAGGTATTT-TAATTTATCTA 2209 Query 138306 TTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTT-TGGTGTGGCAGCAATCTTCCGATT 138364 || ||||||| |||| |||||| | ||| || |||||| || || || |||| Sbjct 2208 TTAGGTCAATTTGGTTG-TTCTTTA-TGCCTAATTCTGGTGTAACAAATATATTTTGATT 2151 Query 138365 C---CTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGG 138421 | || || ||| | ||| |||| |||| ||||| | ||| | ||| |||| ||||| Sbjct 2150 CATCCTCTTTTTC--TAAGGATTTC-ATAATTGGACATTGAACTCATTTTATATTATGGG 2094 Query 138422 CGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAA 138481 || | | | | | |||| | || ||| | | ||||||||||| ||| | |||| Sbjct 2093 AGTTGTCGATGTATTAGGTGTTACTTTGCCCGGCAATATTCATGGTGATACCACA-AAAA 2035 Query 138482 TACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGA 138541 ||| || | | |||||| || | || | || ||| ||| ||| | || ||| ||| Sbjct 2034 TACCTTATTTTAAGATGATGATGA--CATAGACATTTTAAGTTTTTAATCCAACTTAAGG 1977 Query 138542 AGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGC 138601 ||||| ||||||||||| | ||| ||||| | || | |||||| | || | Sbjct 1976 TAAAGAAGTTTATTCAATGGTCATCACTATCCGTTTTTTATCCCTAATCTTCGAGGTTAC 1917 Query 138602 TTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGT 138643 |||| ||||||| |||| | || ||||||||| | ||||| Sbjct 1916 TTTTTCTAATAAGTGTTGATTACATTTCTTTATGTTATTTGT 1875 >seq161624 Length=13970 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 135707 GGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTAC 135766 |||| ||||||||||| | | |||| |||||||||||||||| ||| || || Sbjct 9734 GGTCATGAGTGGGAACTTAGATTTTGTCTGGATATGCGCCCTTGGATTGTTGTTGCATAT 9793 Query 135767 TCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCT 135826 ||| | | ||||| | | |||||| ||||||| || || ||| | || ||| Sbjct 9794 TCAACTCTTGTTGTAGTTACTACTGTTGTTTTCTTGATCAACCTAATCGGTCAATAAAAC 9853 Query 135827 TTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAG 135886 || | || ||||||| || || ||| || ||||| |||| ||| |||| |||||| Sbjct 9854 TTTTCTAATTGTATGCCTCTAGGACTTTTTGATACTTTCAACTTCATAATTGTATTCCAG 9913 Query 135887 GCAGAACACAACATTCTCATGCATCCTTTCCACA 135920 || || ||| ||| || ||||| || ||||||| Sbjct 9914 GCTGAGTACATCATCCTTATGCACCCATTCCACA 9947 >seq129087 Length=3483 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 138237 CGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTG 138296 || || ||||| |||||||||||||||| ||| || | ||| || || || ||||| Sbjct 296 CGACCTTACAATGCAATCGCATTCTCTGCTCCAATTGTTGTTTTTGTTTCTGTATTCCTA 355 Query 138297 ATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATC 138356 || ||||| || ||||| || ||||| ||| || || |||||||| | | | || Sbjct 356 ATTTATCCATTAGGTCAGTCTGGTTGGCTCTCTGTGCCTAGTTTTGGTGTAGTAACTATA 415 Query 138357 TTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATG 138416 || |||||| || | || || || || | ||| |||| | ||||| ||||||||| Sbjct 416 TTTCGATTCATGCTCTTTTGCCAAGGGTTTCGTAATCGGACATTGAACCCATTTCATATG 475 Query 138417 ATG 138419 || Sbjct 476 TTG 478 >seq18711 Length=6029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 138439 GTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATG 138498 ||| ||| | || || | |||||||||||||| | ||||| |||| | |||||||| Sbjct 3080 GTGATGCCCAACTATGGGTTATTCATGGTGCTAGTACAAAAAATGCTTTATTTGAAGATG 3139 Query 138499 GCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAA 138558 | || |||| ||| || ||| | || ||| || |||||||| ||||||| Sbjct 3140 GTGATGGTGTAAATGTATTTCGTGCTTTTAATCCAACTTAAACCGAAGAAACTTATTCAA 3199 Query 138559 TGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTT 138618 | || || ||||| ||| || ||| |||| || || |||||||| ||| | ||| Sbjct 3200 TAGTCACCACTAACGGTTTCTTGTCTTAAATTTTGGGGGTTGCTTTTTTCAATTGGTGTT 3259 Query 138619 GGCTTCACTTCTTTATGCTCTTTGT 138643 || || ||||||||| | ||||| Sbjct 3260 GGTCACATTTCTTTATGTTATTTGT 3284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626316098777600